STRINGSTRING
Bpet1513 Bpet1513 Bpet1540 Bpet1540 Bpet1541 Bpet1541 Bpet1542 Bpet1542 CAP41852.1 CAP41852.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bpet1513Biphenyl dioxygenase small subunit. (172 aa)
Bpet1540Probable Ring hydroxylating alpha subunit. (420 aa)
Bpet1541Conserved hypothetical protein. (159 aa)
Bpet1542Vanillate O-demethylase oxidoreductase. (325 aa)
CAP41852.1Pseudogene. (179 aa)
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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