STRINGSTRING
Bpet0679 Bpet0679 Bpet2808 Bpet2808 recG recG Bpet1623 Bpet1623 Bpet2940 Bpet2940 Bpet3400 Bpet3400 Bpet0485 Bpet0485 rep rep ku ku Bpet2902 Bpet2902 Bpet0581 Bpet0581 Bpet3555 Bpet3555 Bpet4282 Bpet4282 Bpet4403 Bpet4403 Bpet0685 Bpet0685 ruvA ruvA fis fis recB recB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bpet0679Putative exported protein. (191 aa)
Bpet2808DNA helicase II. (752 aa)
recGATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (696 aa)
Bpet1623Hypothetical protein. (207 aa)
Bpet2940Conserved hypothetical protein. (385 aa)
Bpet3400ATP-dependent DNA helicase. (707 aa)
Bpet0485Conserved hypothetical protein. (294 aa)
repATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (685 aa)
kuNon-homologous end joining protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (309 aa)
Bpet2902Hypothetical protein. (110 aa)
Bpet0581Hypothetical protein predicted by Glimmer/Critica. (209 aa)
Bpet3555Conserved hypothetical protein; RecB family exonuclease. (990 aa)
Bpet4282Hypothetical protein predicted by Glimmer/Critica. (550 aa)
Bpet4403Hypothetical protein predicted by Glimmer/Critica. (94 aa)
Bpet0685Conserved hypothetical protein. (92 aa)
ruvAHolliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (190 aa)
fisDNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. (79 aa)
recBrecB. (265 aa)
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 94624
Other names: B. petrii, Bordetella petrii von Wintzingerode et al. 2001, CCUG 43448, DSM 12804, strain Se-1111R
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