(17 nodes) Mixed, incl. Furin-like repeats, and Zinc finger, RING-CH-type network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00026	RING-type domain-containing protein. (243 aa)
	PTSG_01380	RING-type domain-containing protein. (341 aa)
	PTSG_04258	Uncharacterized protein. (768 aa)
	PTSG_12154	RING-type domain-containing protein. (585 aa)
	PTSG_04912	RING-type domain-containing protein. (1083 aa)
	PTSG_05162	Uncharacterized protein. (1552 aa)
	PTSG_07523	Uncharacterized protein. (1734 aa)
	PTSG_07734	Uncharacterized protein. (1742 aa)
	PTSG_07497	C2 domain-containing protein. (897 aa)
	PTSG_09976	RING-type domain-containing protein. (500 aa)
	PTSG_09759	RING-type domain-containing protein. (1795 aa)
	PTSG_09827	Uncharacterized protein. (567 aa)
	PTSG_10482	Uncharacterized protein. (2746 aa)
	PTSG_13059	TPR_REGION domain-containing protein. (458 aa)
	PTSG_10925	TKL/DICTY4 protein kinase. (1423 aa)
	PTSG_13064	Uncharacterized protein. (1966 aa)
	PTSG_11120	P75 neurotrophin receptor b. (2845 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00026	PTSG_10925	F2TVB4	F2URE6	RING-type domain-containing protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_01380	PTSG_10925	F2U064	F2URE6	RING-type domain-containing protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_04258	PTSG_10925	F2U720	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_04912	PTSG_10925	F2U8Z5	F2URE6	RING-type domain-containing protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_05162	PTSG_10925	F2UAP3	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.589
PTSG_07497	PTSG_10925	F2UIW5	F2URE6	C2 domain-containing protein.	TKL/DICTY4 protein kinase.	0.736
PTSG_07523	PTSG_10925	F2UH05	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.589
PTSG_07734	PTSG_10925	F2UHM1	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.736
PTSG_09759	PTSG_10925	F2UNZ0	F2URE6	RING-type domain-containing protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_09827	PTSG_10925	F2UP60	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.589
PTSG_09976	PTSG_10925	F2UNP9	F2URE6	RING-type domain-containing protein.	TKL/DICTY4 protein kinase.	0.629
PTSG_10482	PTSG_10925	F2UPS9	F2URE6	Uncharacterized protein.	TKL/DICTY4 protein kinase.	0.589
PTSG_10925	PTSG_00026	F2URE6	F2TVB4	TKL/DICTY4 protein kinase.	RING-type domain-containing protein.	0.629
PTSG_10925	PTSG_01380	F2URE6	F2U064	TKL/DICTY4 protein kinase.	RING-type domain-containing protein.	0.629
PTSG_10925	PTSG_04258	F2URE6	F2U720	TKL/DICTY4 protein kinase.	Uncharacterized protein.	0.629
PTSG_10925	PTSG_04912	F2URE6	F2U8Z5	TKL/DICTY4 protein kinase.	RING-type domain-containing protein.	0.629
PTSG_10925	PTSG_05162	F2URE6	F2UAP3	TKL/DICTY4 protein kinase.	Uncharacterized protein.	0.589
PTSG_10925	PTSG_07497	F2URE6	F2UIW5	TKL/DICTY4 protein kinase.	C2 domain-containing protein.	0.736
PTSG_10925	PTSG_07523	F2URE6	F2UH05	TKL/DICTY4 protein kinase.	Uncharacterized protein.	0.589
PTSG_10925	PTSG_07734	F2URE6	F2UHM1	TKL/DICTY4 protein kinase.	Uncharacterized protein.	0.736

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