(19 nodes) Mixed, incl. Ubiquitin homologues, and Ubiquitin conjugating enzyme activity network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00516	Uncharacterized protein. (6014 aa)
	PTSG_01005	Uncharacterized protein. (613 aa)
	PTSG_01610	Uncharacterized protein. (340 aa)
	PTSG_11742	Uncharacterized protein. (2017 aa)
	PTSG_02541	WD_REPEATS_REGION domain-containing protein. (693 aa)
	PTSG_02884	Ubiquitin. (262 aa)
	PTSG_03406	UBIQUITIN_CONJUGAT_2 domain-containing protein. (270 aa)
	PTSG_03578	Uncharacterized protein. (2008 aa)
	PTSG_03622	Neural cell expressed. (79 aa)
	PTSG_03964	Ubiquitin. (156 aa)
	PTSG_04623	Uncharacterized protein. (380 aa)
	PTSG_05009	U-box domain-containing protein. (1134 aa)
	PTSG_05046	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (255 aa)
	PTSG_04716	Uncharacterized protein. (214 aa)
	PTSG_05213	OTU domain-containing protein. (259 aa)
	PTSG_07150	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (269 aa)
	PTSG_06487	Uncharacterized protein. (586 aa)
	PTSG_10418	Ubiquitin-conjugating enzyme H5b; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	PTSG_10998	Uncharacterized protein. (341 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00516	PTSG_01005	F2TWP4	F2TY44	Uncharacterized protein.	Uncharacterized protein.	0.991
PTSG_00516	PTSG_01610	F2TWP4	F2TYF8	Uncharacterized protein.	Uncharacterized protein.	0.781
PTSG_00516	PTSG_02541	F2TWP4	F2U2H5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.991
PTSG_00516	PTSG_02884	F2TWP4	F2U3L9	Uncharacterized protein.	Ubiquitin.	0.968
PTSG_00516	PTSG_03406	F2TWP4	F2U539	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.679
PTSG_00516	PTSG_03578	F2TWP4	F2U604	Uncharacterized protein.	Uncharacterized protein.	0.991
PTSG_00516	PTSG_03622	F2TWP4	F2U645	Uncharacterized protein.	Neural cell expressed.	0.968
PTSG_00516	PTSG_03964	F2TWP4	F2U7D9	Uncharacterized protein.	Ubiquitin.	0.967
PTSG_00516	PTSG_04623	F2TWP4	F2U7Y9	Uncharacterized protein.	Uncharacterized protein.	0.781
PTSG_00516	PTSG_04716	F2TWP4	F2U9I0	Uncharacterized protein.	Uncharacterized protein.	0.781
PTSG_00516	PTSG_05009	F2TWP4	F2U990	Uncharacterized protein.	U-box domain-containing protein.	0.645
PTSG_00516	PTSG_05046	F2TWP4	F2U9D2	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.	0.774
PTSG_00516	PTSG_05213	F2TWP4	F2UAU3	Uncharacterized protein.	OTU domain-containing protein.	0.585
PTSG_00516	PTSG_06487	F2TWP4	F2UFY3	Uncharacterized protein.	Uncharacterized protein.	0.781
PTSG_00516	PTSG_07150	F2TWP4	F2UE73	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.774
PTSG_00516	PTSG_10418	F2TWP4	F2UPL4	Uncharacterized protein.	Ubiquitin-conjugating enzyme H5b; Belongs to the ubiquitin-conjugating enzyme family.	0.774
PTSG_00516	PTSG_10998	F2TWP4	F2USE5	Uncharacterized protein.	Uncharacterized protein.	0.756
PTSG_00516	PTSG_11742	F2TWP4	F2U0G4	Uncharacterized protein.	Uncharacterized protein.	0.758
PTSG_01005	PTSG_00516	F2TY44	F2TWP4	Uncharacterized protein.	Uncharacterized protein.	0.991
PTSG_01005	PTSG_01610	F2TY44	F2TYF8	Uncharacterized protein.	Uncharacterized protein.	0.878

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