(32 nodes) Mixed, incl. Structural constituent of chromatin, and Set1C/COMPASS complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00418	Chromodomain helicase DNA binding protein 1. (1534 aa)
	PTSG_00674	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	PTSG_00675	Histone H2A; Belongs to the histone H2A family. (133 aa)
	PTSG_01675	Histones H3 and H4. (140 aa)
	PTSG_01731	Uncharacterized protein. (122 aa)
	PTSG_01784	Uncharacterized protein. (589 aa)
	PTSG_11732	SPRY domain-containing protein. (309 aa)
	PTSG_02419	Importin N-terminal domain-containing protein. (725 aa)
	PTSG_11893	Uncharacterized protein. (296 aa)
	PTSG_11931	Histone-binding protein RBBP4. (429 aa)
	PTSG_03353	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (471 aa)
	PTSG_03392	Uncharacterized protein. (454 aa)
	PTSG_03859	Histone H2A; Belongs to the histone H2A family. (177 aa)
	PTSG_04407	WD_REPEATS_REGION domain-containing protein. (996 aa)
	PTSG_07049	WD_REPEATS_REGION domain-containing protein. (147 aa)
	PTSG_07121	Uncharacterized protein. (808 aa)
	PTSG_07782	Hat1_N domain-containing protein. (468 aa)
	PTSG_07815	PHD-type domain-containing protein. (586 aa)
	PTSG_07956	TPR_REGION domain-containing protein. (398 aa)
	PTSG_07699	Uncharacterized protein. (637 aa)
	PTSG_08119	Histone H3; Belongs to the histone H3 family. (136 aa)
	PTSG_08120	Histone H2B; Belongs to the histone H2B family. (123 aa)
	PTSG_12693	Uncharacterized protein. (3557 aa)
	PTSG_08270	WD repeat domain 16. (609 aa)
	PTSG_08393	WD_REPEATS_REGION domain-containing protein. (237 aa)
	PTSG_08872	Uncharacterized protein. (932 aa)
	PTSG_09572	WD_REPEATS_REGION domain-containing protein. (324 aa)
	PTSG_09298	Histone H3. (135 aa)
	PTSG_12950	MPN domain-containing protein. (2470 aa)
	PTSG_10056	Histone H2B; Belongs to the histone H2B family. (130 aa)
	PTSG_10767	WD-repeat protein. (1092 aa)
	PTSG_11229	Histone H2A; Belongs to the histone H2A family. (129 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00418	PTSG_00674	F2TWF2	F2TX57	Chromodomain helicase DNA binding protein 1.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.910
PTSG_00418	PTSG_00675	F2TWF2	F2TX58	Chromodomain helicase DNA binding protein 1.	Histone H2A; Belongs to the histone H2A family.	0.579
PTSG_00418	PTSG_01675	F2TWF2	F2TYM3	Chromodomain helicase DNA binding protein 1.	Histones H3 and H4.	0.689
PTSG_00418	PTSG_03353	F2TWF2	F2U4X6	Chromodomain helicase DNA binding protein 1.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.415
PTSG_00418	PTSG_03859	F2TWF2	F2U5L1	Chromodomain helicase DNA binding protein 1.	Histone H2A; Belongs to the histone H2A family.	0.579
PTSG_00418	PTSG_08119	F2TWF2	F2UI19	Chromodomain helicase DNA binding protein 1.	Histone H3; Belongs to the histone H3 family.	0.689
PTSG_00418	PTSG_08872	F2TWF2	F2UKY3	Chromodomain helicase DNA binding protein 1.	Uncharacterized protein.	0.702
PTSG_00418	PTSG_09298	F2TWF2	F2UM82	Chromodomain helicase DNA binding protein 1.	Histone H3.	0.689
PTSG_00418	PTSG_11229	F2TWF2	F2UST4	Chromodomain helicase DNA binding protein 1.	Histone H2A; Belongs to the histone H2A family.	0.675
PTSG_00418	PTSG_11893	F2TWF2	F2U2Q3	Chromodomain helicase DNA binding protein 1.	Uncharacterized protein.	0.596
PTSG_00418	PTSG_11931	F2TWF2	F2U3I1	Chromodomain helicase DNA binding protein 1.	Histone-binding protein RBBP4.	0.508
PTSG_00674	PTSG_00418	F2TX57	F2TWF2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Chromodomain helicase DNA binding protein 1.	0.910
PTSG_00674	PTSG_00675	F2TX57	F2TX58	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H2A; Belongs to the histone H2A family.	0.981
PTSG_00674	PTSG_01675	F2TX57	F2TYM3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histones H3 and H4.	0.932
PTSG_00674	PTSG_01731	F2TX57	F2TYS9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.849
PTSG_00674	PTSG_01784	F2TX57	F2TYY5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.725
PTSG_00674	PTSG_03353	F2TX57	F2U4X6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.522
PTSG_00674	PTSG_03392	F2TX57	F2U525	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.510
PTSG_00674	PTSG_03859	F2TX57	F2U5L1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H2A; Belongs to the histone H2A family.	0.980
PTSG_00674	PTSG_04407	F2TX57	F2U8G8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD_REPEATS_REGION domain-containing protein.	0.658

page 1 of 30

Server load: low (34%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About