(76 nodes) Mixed, incl. Zinc finger C2H2 superfamily, and Extracellular matrix organization network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_11534	Uncharacterized protein. (248 aa)
	PTSG_00175	Uncharacterized protein. (878 aa)
	PTSG_00219	Uncharacterized protein. (2117 aa)
	PTSG_00660	Grancalcin. (210 aa)
	PTSG_00661	Cytochrome b561 domain-containing protein. (252 aa)
	PTSG_00741	Uncharacterized protein. (164 aa)
	PTSG_00742	Uncharacterized protein. (1178 aa)
	PTSG_00867	Guanylate cyclase domain-containing protein. (520 aa)
	PTSG_00868	Guanylate cyclase domain-containing protein. (1097 aa)
	PTSG_01042	Uncharacterized protein. (2601 aa)
	PTSG_01043	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (1653 aa)
	PTSG_01868	Uncharacterized protein. (1514 aa)
	PTSG_13239	Uncharacterized protein. (377 aa)
	PTSG_02007	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (829 aa)
	PTSG_11702	Dynein light chain 1. (185 aa)
	PTSG_01298	Zinc finger protein. (353 aa)
	PTSG_01230	Peptidase S53 domain-containing protein. (543 aa)
	PTSG_02110	Uncharacterized protein. (379 aa)
	PTSG_11874	Uncharacterized protein. (1222 aa)
	PTSG_02426	Uncharacterized protein. (506 aa)
	PTSG_02436	Uncharacterized protein. (930 aa)
	PTSG_02442	Uncharacterized protein. (340 aa)
	PTSG_02470	DUF4550 domain-containing protein. (1188 aa)
	PTSG_11887	Uncharacterized protein. (499 aa)
	PTSG_11892	Uncharacterized protein. (1081 aa)
	PTSG_02923	c-Myc-binding protein. (78 aa)
	PTSG_02980	Uncharacterized protein. (832 aa)
	PTSG_03009	Uncharacterized protein. (2354 aa)
	PTSG_11953	Uncharacterized protein. (3033 aa)
	PTSG_03086	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (911 aa)
	PTSG_03236	Uncharacterized protein. (372 aa)
	PTSG_03315	Uncharacterized protein. (398 aa)
	PTSG_03364	Uncharacterized protein. (406 aa)
	PTSG_04462	Uncharacterized protein. (616 aa)
	PTSG_04488	MULE domain-containing protein. (259 aa)
	PTSG_04954	Uncharacterized protein. (253 aa)
	PTSG_05036	Uncharacterized protein. (228 aa)
	PTSG_12211	Uncharacterized protein. (740 aa)
	PTSG_12283	EGF-like domain-containing protein. (2326 aa)
	PTSG_05256	Uncharacterized protein. (585 aa)
	PTSG_05301	Zinc finger protein zfp31. (507 aa)
	PTSG_05325	Early growth response protein. (798 aa)
	PTSG_05348	D-aminoacyl-tRNA deacylase. (173 aa)
	PTSG_05384	Uncharacterized protein. (270 aa)
	PTSG_12315	Uncharacterized protein. (2194 aa)
	PTSG_05185	Zinc finger protein. (705 aa)
	PTSG_06147	IMD domain-containing protein. (725 aa)
	PTSG_12389	BPTI/Kunitz inhibitor domain-containing protein. (937 aa)
	PTSG_06095	Uncharacterized protein. (260 aa)
	PTSG_12529	Uncharacterized protein. (3348 aa)
	PTSG_07122	Zinc finger protein zfp2. (804 aa)
	PTSG_07188	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (521 aa)
	PTSG_07263	Uncharacterized protein. (1793 aa)
	PTSG_07827	Uncharacterized protein. (1886 aa)
	PTSG_07919	CKK domain-containing protein. (1334 aa)
	PTSG_12665	Galectin domain-containing protein. (1104 aa)
	PTSG_07991	Mantle protein 9. (1893 aa)
	PTSG_08010	Uncharacterized protein. (218 aa)
	PTSG_12761	Serine/threonine protein kinase. (2796 aa)
	PTSG_12777	P4Hc domain-containing protein. (500 aa)
	PTSG_08906	Uncharacterized protein. (186 aa)
	PTSG_09170	Zinc finger protein. (480 aa)
	PTSG_09173	Zinc finger protein. (386 aa)
	PTSG_09911	Uncharacterized protein. (913 aa)
	PTSG_09747	Uncharacterized protein. (1413 aa)
	PTSG_12930	Uncharacterized protein. (280 aa)
	PTSG_10036	Uncharacterized protein. (902 aa)
	PTSG_13051	Uncharacterized protein. (822 aa)
	PTSG_13090	TLC domain-containing protein. (287 aa)
	PTSG_10218	Gastrula zinc finger protein XlCGF17.1. (677 aa)
	PTSG_10333	Uncharacterized protein. (327 aa)
	PTSG_10543	TNFR-Cys domain-containing protein. (1756 aa)
	PTSG_10556	Uncharacterized protein. (454 aa)
	PTSG_11172	Uncharacterized protein. (761 aa)
	PTSG_11194	Uncharacterized protein. (2304 aa)
	PTSG_13191	Uncharacterized protein. (539 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00219	PTSG_02923	F2TVV1	F2U3Q9	Uncharacterized protein.	c-Myc-binding protein.	0.464
PTSG_00219	PTSG_04954	F2TVV1	F2U935	Uncharacterized protein.	Uncharacterized protein.	0.459
PTSG_00219	PTSG_11887	F2TVV1	F2U2G1	Uncharacterized protein.	Uncharacterized protein.	0.778
PTSG_00219	PTSG_11953	F2TVV1	F2U415	Uncharacterized protein.	Uncharacterized protein.	0.481
PTSG_00660	PTSG_01043	F2TX44	F2TY84	Grancalcin.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.707
PTSG_00660	PTSG_02007	F2TX44	F2TZL5	Grancalcin.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.707
PTSG_00660	PTSG_03086	F2TX44	F2U474	Grancalcin.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.707
PTSG_00660	PTSG_07188	F2TX44	F2UEB3	Grancalcin.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.707
PTSG_00741	PTSG_11887	F2TXC3	F2U2G1	Uncharacterized protein.	Uncharacterized protein.	0.681
PTSG_00742	PTSG_11887	F2TXC4	F2U2G1	Uncharacterized protein.	Uncharacterized protein.	0.681
PTSG_01042	PTSG_11887	F2TY83	F2U2G1	Uncharacterized protein.	Uncharacterized protein.	0.503
PTSG_01043	PTSG_00660	F2TY84	F2TX44	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Grancalcin.	0.707
PTSG_01043	PTSG_11887	F2TY84	F2U2G1	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.528
PTSG_01868	PTSG_11887	F2TZ68	F2U2G1	Uncharacterized protein.	Uncharacterized protein.	0.590
PTSG_02007	PTSG_00660	F2TZL5	F2TX44	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Grancalcin.	0.707
PTSG_02007	PTSG_11887	F2TZL5	F2U2G1	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	Uncharacterized protein.	0.528
PTSG_02470	PTSG_11887	F2U2A6	F2U2G1	DUF4550 domain-containing protein.	Uncharacterized protein.	0.478
PTSG_02923	PTSG_00219	F2U3Q9	F2TVV1	c-Myc-binding protein.	Uncharacterized protein.	0.464
PTSG_02923	PTSG_04954	F2U3Q9	F2U935	c-Myc-binding protein.	Uncharacterized protein.	0.517
PTSG_02923	PTSG_11887	F2U3Q9	F2U2G1	c-Myc-binding protein.	Uncharacterized protein.	0.860

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