(8 nodes) RNA polymerase II, core complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00566	S1 motif domain-containing protein. (171 aa)
	PTSG_01958	DNA-directed RNA polymerase II subunit RPB3. (271 aa)
	PTSG_02173	DNA-directed RNA polymerase II subunit J. (202 aa)
	PTSG_02289	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1193 aa)
	PTSG_06010	Uncharacterized protein. (58 aa)
	PTSG_10432	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (222 aa)
	PTSG_10802	RPOL4c domain-containing protein. (153 aa)
	PTSG_11312	DNA-directed RNA polymerase I. (69 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00566	PTSG_01958	F2TWU7	F2TZG3	S1 motif domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.999
PTSG_00566	PTSG_02173	F2TWU7	F2U1F2	S1 motif domain-containing protein.	DNA-directed RNA polymerase II subunit J.	0.999
PTSG_00566	PTSG_02289	F2TWU7	F2U1S2	S1 motif domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PTSG_00566	PTSG_06010	F2TWU7	F2UDF0	S1 motif domain-containing protein.	Uncharacterized protein.	0.999
PTSG_00566	PTSG_10432	F2TWU7	F2UPM8	S1 motif domain-containing protein.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PTSG_00566	PTSG_10802	F2TWU7	F2UPY9	S1 motif domain-containing protein.	RPOL4c domain-containing protein.	0.999
PTSG_00566	PTSG_11312	F2TWU7	F2UT16	S1 motif domain-containing protein.	DNA-directed RNA polymerase I.	0.999
PTSG_01958	PTSG_00566	F2TZG3	F2TWU7	DNA-directed RNA polymerase II subunit RPB3.	S1 motif domain-containing protein.	0.999
PTSG_01958	PTSG_02173	F2TZG3	F2U1F2	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase II subunit J.	0.999
PTSG_01958	PTSG_02289	F2TZG3	F2U1S2	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PTSG_01958	PTSG_06010	F2TZG3	F2UDF0	DNA-directed RNA polymerase II subunit RPB3.	Uncharacterized protein.	0.999
PTSG_01958	PTSG_10432	F2TZG3	F2UPM8	DNA-directed RNA polymerase II subunit RPB3.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PTSG_01958	PTSG_10802	F2TZG3	F2UPY9	DNA-directed RNA polymerase II subunit RPB3.	RPOL4c domain-containing protein.	0.999
PTSG_01958	PTSG_11312	F2TZG3	F2UT16	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase I.	0.999
PTSG_02173	PTSG_00566	F2U1F2	F2TWU7	DNA-directed RNA polymerase II subunit J.	S1 motif domain-containing protein.	0.999
PTSG_02173	PTSG_01958	F2U1F2	F2TZG3	DNA-directed RNA polymerase II subunit J.	DNA-directed RNA polymerase II subunit RPB3.	0.999
PTSG_02173	PTSG_02289	F2U1F2	F2U1S2	DNA-directed RNA polymerase II subunit J.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PTSG_02173	PTSG_06010	F2U1F2	F2UDF0	DNA-directed RNA polymerase II subunit J.	Uncharacterized protein.	0.999
PTSG_02173	PTSG_10432	F2U1F2	F2UPM8	DNA-directed RNA polymerase II subunit J.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PTSG_02173	PTSG_10802	F2U1F2	F2UPY9	DNA-directed RNA polymerase II subunit J.	RPOL4c domain-containing protein.	0.999

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