(107 nodes) Mixed, incl. EGF-like domain, and Collagen chain trimerization network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00115	Uncharacterized protein. (587 aa)
	PTSG_11571	Uncharacterized protein. (1748 aa)
	PTSG_00277	Uncharacterized protein. (2847 aa)
	PTSG_11601	Uncharacterized protein. (657 aa)
	PTSG_00548	Uncharacterized protein. (384 aa)
	PTSG_00614	Chitin-binding protein. (1724 aa)
	PTSG_00638	Fibropellin III. (6625 aa)
	PTSG_00710	Uncharacterized protein. (2619 aa)
	PTSG_00729	Fibulin-2. (994 aa)
	PTSG_00753	TK protein kinase. (1086 aa)
	PTSG_00841	Uncharacterized protein. (256 aa)
	PTSG_11652	SH2 domain-containing protein. (1229 aa)
	PTSG_00996	Uncharacterized protein. (1619 aa)
	PTSG_11668	Uncharacterized protein. (1760 aa)
	PTSG_01576	Fn3_like domain-containing protein. (499 aa)
	PTSG_01599	Tamm-Horsfall protein. (1329 aa)
	PTSG_02028	Uncharacterized protein. (719 aa)
	PTSG_02068	Uncharacterized protein. (417 aa)
	PTSG_01279	ELYS domain-containing protein. (1678 aa)
	PTSG_01285	Uncharacterized protein. (1006 aa)
	PTSG_01505	Uncharacterized protein. (1724 aa)
	PTSG_01083	Tenascin C. (8565 aa)
	PTSG_01084	Uncharacterized protein. (10836 aa)
	PTSG_02374	Uncharacterized protein. (1112 aa)
	PTSG_02502	Uncharacterized protein. (1042 aa)
	PTSG_02097	Uncharacterized protein. (692 aa)
	PTSG_02568	Fibropellin Ia. (2508 aa)
	PTSG_02681	COR domain-containing protein. (1593 aa)
	PTSG_11950	Uncharacterized protein. (2007 aa)
	PTSG_03008	NHL repeat protein. (1484 aa)
	PTSG_03226	Uncharacterized protein. (1288 aa)
	PTSG_11996	Uncharacterized protein. (440 aa)
	PTSG_12039	Uncharacterized protein. (959 aa)
	PTSG_03689	Uncharacterized protein. (569 aa)
	PTSG_04072	J domain-containing protein. (1038 aa)
	PTSG_12127	Uncharacterized protein. (531 aa)
	PTSG_04123	Uncharacterized protein. (778 aa)
	PTSG_04390	Uncharacterized protein. (1838 aa)
	PTSG_04397	Fn3_like domain-containing protein. (614 aa)
	PTSG_04955	Uncharacterized protein. (1104 aa)
	PTSG_05052	Recep_L_domain domain-containing protein. (520 aa)
	PTSG_04829	Uncharacterized protein. (473 aa)
	PTSG_04835	Uncharacterized protein. (694 aa)
	PTSG_05294	EGF-like domain-containing protein. (1197 aa)
	PTSG_12296	Uncharacterized protein. (2881 aa)
	PTSG_12308	Uncharacterized protein. (1109 aa)
	PTSG_05175	Uncharacterized protein. (709 aa)
	PTSG_05722	TK/RTKC protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1713 aa)
	PTSG_05474	PKD domain-containing protein. (1532 aa)
	PTSG_05572	Uncharacterized protein. (1031 aa)
	PTSG_05577	Uncharacterized protein. (2190 aa)
	PTSG_05602	Uncharacterized protein. (1271 aa)
	PTSG_12347	Uncharacterized protein. (1802 aa)
	PTSG_06159	Uncharacterized protein. (913 aa)
	PTSG_06354	Uncharacterized protein. (944 aa)
	PTSG_06388	Uncharacterized protein. (752 aa)
	PTSG_05830	LIM zinc-binding domain-containing protein. (787 aa)
	PTSG_05950	ANK_REP_REGION domain-containing protein. (1090 aa)
	PTSG_06003	Uncharacterized protein. (454 aa)
	PTSG_07019	Uncharacterized protein. (2317 aa)
	PTSG_06738	Uncharacterized protein. (748 aa)
	PTSG_06858	Uncharacterized protein. (1466 aa)
	PTSG_06921	Apple domain-containing protein. (516 aa)
	PTSG_06597	Uncharacterized protein. (870 aa)
	PTSG_06687	Uncharacterized protein. (1767 aa)
	PTSG_06573	Uncharacterized protein. (1434 aa)
	PTSG_07770	NOTCH2 protein. (4350 aa)
	PTSG_07777	Adamts family protein 2. (1720 aa)
	PTSG_12644	Uncharacterized protein. (363 aa)
	PTSG_07926	Epidermal growth factor. (2923 aa)
	PTSG_07979	Uncharacterized protein. (626 aa)
	PTSG_07628	WW domain-containing protein. (705 aa)
	PTSG_12630	PPC domain-containing protein. (1269 aa)
	PTSG_08062	Uncharacterized protein. (533 aa)
	PTSG_08172	Collagen type III alpha 1. (1706 aa)
	PTSG_07484	TK protein kinase. (1030 aa)
	PTSG_07498	Beta-glucosidase. (900 aa)
	PTSG_07362	Uncharacterized protein. (631 aa)
	PTSG_08578	Uncharacterized protein. (1474 aa)
	PTSG_08713	Uncharacterized protein. (1028 aa)
	PTSG_12793	Uncharacterized protein. (1900 aa)
	PTSG_08808	Zinc finger protein. (1555 aa)
	PTSG_09485	Uncharacterized protein. (2175 aa)
	PTSG_09603	Uncharacterized protein. (278 aa)
	PTSG_09457	Uncharacterized protein. (455 aa)
	PTSG_09165	Roc domain-containing protein. (1276 aa)
	PTSG_12945	Uncharacterized protein. (1065 aa)
	PTSG_09907	Uncharacterized protein. (594 aa)
	PTSG_09729	Poly [ADP-ribose] polymerase. (1615 aa)
	PTSG_09826	Uncharacterized protein. (2429 aa)
	PTSG_09992	Uncharacterized protein. (560 aa)
	PTSG_10437	Uncharacterized protein. (1345 aa)
	PTSG_13060	EGF-like domain-containing protein. (727 aa)
	PTSG_10515	Uncharacterized protein. (1917 aa)
	PTSG_10675	Uncharacterized protein. (785 aa)
	PTSG_10158	Uncharacterized protein. (803 aa)
	PTSG_10192	Uncharacterized protein. (875 aa)
	PTSG_10289	Uncharacterized protein. (821 aa)
	PTSG_10401	Teneurin-2. (9217 aa)
	PTSG_10908	Uncharacterized protein. (967 aa)
	PTSG_13105	Uncharacterized protein. (1214 aa)
	PTSG_10645	Uncharacterized protein. (1477 aa)
	PTSG_13129	Uncharacterized protein. (660 aa)
	PTSG_11382	Uncharacterized protein. (1301 aa)
	PTSG_11409	Uncharacterized protein. (648 aa)
	PTSG_13222	Uncharacterized protein. (449 aa)
	PTSG_11500	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (720 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00115	PTSG_01279	F2TVK3	F2TZW1	Uncharacterized protein.	ELYS domain-containing protein.	0.483
PTSG_00115	PTSG_02681	F2TVK3	F2U300	Uncharacterized protein.	COR domain-containing protein.	0.728
PTSG_00115	PTSG_07484	F2TVK3	F2UIV2	Uncharacterized protein.	TK protein kinase.	0.721
PTSG_00115	PTSG_08062	F2TVK3	F2UHW2	Uncharacterized protein.	Uncharacterized protein.	0.718
PTSG_00115	PTSG_09165	F2TVK3	F2UMX1	Uncharacterized protein.	Roc domain-containing protein.	0.728
PTSG_00115	PTSG_10437	F2TVK3	F2UPN6	Uncharacterized protein.	Uncharacterized protein.	0.728
PTSG_00115	PTSG_11382	F2TVK3	F2UT82	Uncharacterized protein.	Uncharacterized protein.	0.728
PTSG_00277	PTSG_01279	F2TW11	F2TZW1	Uncharacterized protein.	ELYS domain-containing protein.	0.464
PTSG_00548	PTSG_01083	F2TWT0	F2U0R7	Uncharacterized protein.	Tenascin C.	0.839
PTSG_00548	PTSG_01279	F2TWT0	F2TZW1	Uncharacterized protein.	ELYS domain-containing protein.	0.857
PTSG_00548	PTSG_02681	F2TWT0	F2U300	Uncharacterized protein.	COR domain-containing protein.	0.862
PTSG_00548	PTSG_04123	F2TWT0	F2U6N2	Uncharacterized protein.	Uncharacterized protein.	0.528
PTSG_00548	PTSG_06003	F2TWT0	F2UDE3	Uncharacterized protein.	Uncharacterized protein.	0.520
PTSG_00548	PTSG_06597	F2TWT0	F2UFF8	Uncharacterized protein.	Uncharacterized protein.	0.528
PTSG_00548	PTSG_06858	F2TWT0	F2UF06	Uncharacterized protein.	Uncharacterized protein.	0.528
PTSG_00548	PTSG_07484	F2TWT0	F2UIV2	Uncharacterized protein.	TK protein kinase.	0.695
PTSG_00548	PTSG_07979	F2TWT0	F2UGW4	Uncharacterized protein.	Uncharacterized protein.	0.528
PTSG_00548	PTSG_08062	F2TWT0	F2UHW2	Uncharacterized protein.	Uncharacterized protein.	0.800
PTSG_00548	PTSG_08808	F2TWT0	F2UKR8	Uncharacterized protein.	Zinc finger protein.	0.653
PTSG_00548	PTSG_09165	F2TWT0	F2UMX1	Uncharacterized protein.	Roc domain-containing protein.	0.862

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