(15 nodes) GPCR, family 2, secretin-like, conserved site, and GTPase complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_02116	Uncharacterized protein. (701 aa)
	PTSG_05307	Uncharacterized protein. (918 aa)
	PTSG_06041	Uncharacterized protein. (975 aa)
	PTSG_07110	Uncharacterized protein. (1319 aa)
	PTSG_06956	Uncharacterized protein. (1077 aa)
	PTSG_07529	Guanine nucleotide-binding protein G(O) subunit alpha. (359 aa)
	PTSG_08331	Uncharacterized protein. (1698 aa)
	PTSG_08400	NHL repeat-containing protein. (1384 aa)
	PTSG_09542	Uncharacterized protein. (1721 aa)
	PTSG_09543	Uncharacterized protein. (1746 aa)
	PTSG_09376	Uncharacterized protein. (1894 aa)
	PTSG_09128	TKL protein kinase. (1311 aa)
	PTSG_09887	Uncharacterized protein. (300 aa)
	PTSG_10391	Heterotrimeric G protein beta subunit 1. (342 aa)
	PTSG_10914	TKL protein kinase. (2214 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_02116	PTSG_05307	F2U194	F2UA22	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_02116	PTSG_07110	F2U194	F2UE32	Uncharacterized protein.	Uncharacterized protein.	0.952
PTSG_02116	PTSG_07529	F2U194	F2UH11	Uncharacterized protein.	Guanine nucleotide-binding protein G(O) subunit alpha.	0.952
PTSG_02116	PTSG_08331	F2U194	F2UJE0	Uncharacterized protein.	Uncharacterized protein.	0.995
PTSG_02116	PTSG_08400	F2U194	F2UJK7	Uncharacterized protein.	NHL repeat-containing protein.	0.996
PTSG_02116	PTSG_09128	F2U194	F2UMT4	Uncharacterized protein.	TKL protein kinase.	0.863
PTSG_02116	PTSG_09887	F2U194	F2UNF1	Uncharacterized protein.	Uncharacterized protein.	0.952
PTSG_02116	PTSG_10391	F2U194	F2UR62	Uncharacterized protein.	Heterotrimeric G protein beta subunit 1.	0.994
PTSG_02116	PTSG_10914	F2U194	F2URD4	Uncharacterized protein.	TKL protein kinase.	0.469
PTSG_05307	PTSG_02116	F2UA22	F2U194	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_05307	PTSG_06041	F2UA22	F2UDI1	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_05307	PTSG_06956	F2UA22	F2UFA6	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_05307	PTSG_09376	F2UA22	F2UMG0	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_05307	PTSG_09542	F2UA22	F2ULA8	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_05307	PTSG_09543	F2UA22	F2ULA9	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_06041	PTSG_05307	F2UDI1	F2UA22	Uncharacterized protein.	Uncharacterized protein.	0.996
PTSG_06041	PTSG_07110	F2UDI1	F2UE32	Uncharacterized protein.	Uncharacterized protein.	0.952
PTSG_06041	PTSG_07529	F2UDI1	F2UH11	Uncharacterized protein.	Guanine nucleotide-binding protein G(O) subunit alpha.	0.952
PTSG_06041	PTSG_08331	F2UDI1	F2UJE0	Uncharacterized protein.	Uncharacterized protein.	0.995
PTSG_06041	PTSG_08400	F2UDI1	F2UJK7	Uncharacterized protein.	NHL repeat-containing protein.	0.996

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