(12 nodes) Mixed, incl. TLDc domain, and Low-density lipoprotein receptor domain class A network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00744	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1163 aa)
	PTSG_00890	Uncharacterized protein. (1790 aa)
	PTSG_04513	Uncharacterized protein. (1171 aa)
	PTSG_05318	Phosphoprotein phosphatase. (1505 aa)
	PTSG_12401	Uncharacterized protein. (553 aa)
	PTSG_12437	Uncharacterized protein. (795 aa)
	PTSG_06012	TKL protein kinase. (1431 aa)
	PTSG_09380	Uncharacterized protein. (488 aa)
	PTSG_13098	Uncharacterized protein. (1949 aa)
	PTSG_10189	Serine/threonine protein kinase. (1334 aa)
	PTSG_10284	Proprotein convertase subtilisin/kexin type 5. (3035 aa)
	PTSG_13079	Uncharacterized protein. (3080 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00744	PTSG_04513	F2TXC6	F2U8S8	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.411
PTSG_00744	PTSG_05318	F2TXC6	F2UA34	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Phosphoprotein phosphatase.	0.411
PTSG_00744	PTSG_09380	F2TXC6	F2UMG4	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.411
PTSG_00744	PTSG_10284	F2TXC6	F2UQV3	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Proprotein convertase subtilisin/kexin type 5.	0.411
PTSG_00744	PTSG_13079	F2TXC6	F2URY0	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.411
PTSG_00744	PTSG_13098	F2TXC6	F2UQ04	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.411
PTSG_04513	PTSG_00744	F2U8S8	F2TXC6	Uncharacterized protein.	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.411
PTSG_04513	PTSG_12437	F2U8S8	F2UCQ1	Uncharacterized protein.	Uncharacterized protein.	0.411
PTSG_05318	PTSG_00744	F2UA34	F2TXC6	Phosphoprotein phosphatase.	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.411
PTSG_05318	PTSG_12437	F2UA34	F2UCQ1	Phosphoprotein phosphatase.	Uncharacterized protein.	0.411
PTSG_09380	PTSG_00744	F2UMG4	F2TXC6	Uncharacterized protein.	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.411
PTSG_09380	PTSG_12437	F2UMG4	F2UCQ1	Uncharacterized protein.	Uncharacterized protein.	0.411
PTSG_10284	PTSG_00744	F2UQV3	F2TXC6	Proprotein convertase subtilisin/kexin type 5.	TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.411
PTSG_10284	PTSG_12437	F2UQV3	F2UCQ1	Proprotein convertase subtilisin/kexin type 5.	Uncharacterized protein.	0.411
PTSG_12437	PTSG_04513	F2UCQ1	F2U8S8	Uncharacterized protein.	Uncharacterized protein.	0.411
PTSG_12437	PTSG_05318	F2UCQ1	F2UA34	Uncharacterized protein.	Phosphoprotein phosphatase.	0.411
PTSG_12437	PTSG_09380	F2UCQ1	F2UMG4	Uncharacterized protein.	Uncharacterized protein.	0.411
PTSG_12437	PTSG_10284	F2UCQ1	F2UQV3	Uncharacterized protein.	Proprotein convertase subtilisin/kexin type 5.	0.411
PTSG_12437	PTSG_13079	F2UCQ1	F2URY0	Uncharacterized protein.	Uncharacterized protein.	0.411
PTSG_12437	PTSG_13098	F2UCQ1	F2UQ04	Uncharacterized protein.	Uncharacterized protein.	0.411

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