(40 nodes) Mixed, incl. HOPS complex, and VPS9 domain network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_11540	Uncharacterized protein. (966 aa)
	PTSG_00356	G domain-containing protein. (484 aa)
	PTSG_00443	Uncharacterized protein. (597 aa)
	PTSG_00567	CNH domain-containing protein. (904 aa)
	PTSG_00572	Uncharacterized protein. (437 aa)
	PTSG_00886	Uncharacterized protein. (1612 aa)
	PTSG_01884	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (581 aa)
	PTSG_01402	VPS9 domain-containing protein. (661 aa)
	PTSG_01405	Uncharacterized protein. (195 aa)
	PTSG_01557	CNH domain-containing protein. (892 aa)
	PTSG_02136	Vps8 domain-containing protein. (1002 aa)
	PTSG_02540	FYVE-type domain-containing protein. (475 aa)
	PTSG_02578	VPS9 domain-containing protein. (547 aa)
	PTSG_03085	Uncharacterized protein. (1293 aa)
	PTSG_03436	Small GTP binding protein Rab9. (201 aa)
	PTSG_04215	VPS9 domain-containing protein. (238 aa)
	PTSG_04372	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (422 aa)
	PTSG_12180	Uncharacterized protein. (792 aa)
	PTSG_05320	Uncharacterized protein. (163 aa)
	PTSG_05696	PH domain-containing protein. (603 aa)
	PTSG_12329	Pep3_Vps18 domain-containing protein. (907 aa)
	PTSG_06144	Uncharacterized protein. (1889 aa)
	PTSG_06358	Rab-GAP TBC domain-containing protein. (1119 aa)
	PTSG_06394	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (503 aa)
	PTSG_12563	Uncharacterized protein. (1357 aa)
	PTSG_12511	Uncharacterized protein; Belongs to the synaptobrevin family. (241 aa)
	PTSG_06469	Rabaptin domain-containing protein. (724 aa)
	PTSG_06574	Uncharacterized protein. (337 aa)
	PTSG_07928	VPS9 domain-containing protein. (2184 aa)
	PTSG_07434	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (990 aa)
	PTSG_07436	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (588 aa)
	PTSG_12743	Uncharacterized protein. (153 aa)
	PTSG_08731	Uncharacterized protein. (460 aa)
	PTSG_08848	Alginate_lyase domain-containing protein. (453 aa)
	PTSG_08885	Rab5c. (198 aa)
	PTSG_09040	Uncharacterized protein. (604 aa)
	PTSG_09467	Uncharacterized protein. (485 aa)
	PTSG_09110	Uncharacterized protein. (457 aa)
	PTSG_11174	Uncharacterized protein. (1021 aa)
	PTSG_11406	RAB5C protein. (201 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00356	PTSG_00443	F2TW89	F2TWH8	G domain-containing protein.	Uncharacterized protein.	0.725
PTSG_00356	PTSG_00572	F2TW89	F2TWV2	G domain-containing protein.	Uncharacterized protein.	0.725
PTSG_00356	PTSG_02540	F2TW89	F2U2H4	G domain-containing protein.	FYVE-type domain-containing protein.	0.725
PTSG_00356	PTSG_03436	F2TW89	F2U570	G domain-containing protein.	Small GTP binding protein Rab9.	0.414
PTSG_00356	PTSG_05696	F2TW89	F2UAY6	G domain-containing protein.	PH domain-containing protein.	0.457
PTSG_00356	PTSG_06394	F2TW89	F2UCS6	G domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.435
PTSG_00443	PTSG_00356	F2TWH8	F2TW89	Uncharacterized protein.	G domain-containing protein.	0.725
PTSG_00443	PTSG_01402	F2TWH8	F2U088	Uncharacterized protein.	VPS9 domain-containing protein.	0.461
PTSG_00443	PTSG_01405	F2TWH8	F2U091	Uncharacterized protein.	Uncharacterized protein.	0.650
PTSG_00443	PTSG_02540	F2TWH8	F2U2H4	Uncharacterized protein.	FYVE-type domain-containing protein.	0.900
PTSG_00443	PTSG_05696	F2TWH8	F2UAY6	Uncharacterized protein.	PH domain-containing protein.	0.574
PTSG_00443	PTSG_06394	F2TWH8	F2UCS6	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.975
PTSG_00443	PTSG_08848	F2TWH8	F2UKW0	Uncharacterized protein.	Alginate_lyase domain-containing protein.	0.650
PTSG_00443	PTSG_08885	F2TWH8	F2UKZ6	Uncharacterized protein.	Rab5c.	0.650
PTSG_00443	PTSG_11174	F2TWH8	F2USM7	Uncharacterized protein.	Uncharacterized protein.	0.529
PTSG_00443	PTSG_11406	F2TWH8	F2UTB7	Uncharacterized protein.	RAB5C protein.	0.650
PTSG_00443	PTSG_12329	F2TWH8	F2UBE7	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.408
PTSG_00567	PTSG_01405	F2TWU8	F2U091	CNH domain-containing protein.	Uncharacterized protein.	0.518
PTSG_00567	PTSG_01557	F2TWU8	F2U0P7	CNH domain-containing protein.	CNH domain-containing protein.	0.980
PTSG_00567	PTSG_01884	F2TWU8	F2TZ85	CNH domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.934

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