STRINGSTRING
PTSG_00124 PTSG_00124 PTSG_00374 PTSG_00374 PTSG_00419 PTSG_00419 PTSG_00435 PTSG_00435 PTSG_00948 PTSG_00948 PTSG_00967 PTSG_00967 PTSG_01067 PTSG_01067 PTSG_01779 PTSG_01779 PTSG_02034 PTSG_02034 PTSG_11725 PTSG_11725 PTSG_01520 PTSG_01520 PTSG_01207 PTSG_01207 PTSG_02477 PTSG_02477 PTSG_02517 PTSG_02517 PTSG_02548 PTSG_02548 PTSG_03014 PTSG_03014 PTSG_03185 PTSG_03185 PTSG_03331 PTSG_03331 PTSG_03333 PTSG_03333 PTSG_03361 PTSG_03361 PTSG_03403 PTSG_03403 PTSG_03467 PTSG_03467 PTSG_04124 PTSG_04124 PTSG_03905 PTSG_03905 PTSG_12097 PTSG_12097 PTSG_03941 PTSG_03941 PTSG_04552 PTSG_04552 PTSG_04654 PTSG_04654 PTSG_12213 PTSG_12213 PTSG_05295 PTSG_05295 PTSG_05094 PTSG_05094 PTSG_05591 PTSG_05591 PTSG_05637 PTSG_05637 PTSG_06419 PTSG_06419 PTSG_05801 PTSG_05801 PTSG_05853 PTSG_05853 PTSG_06701 PTSG_06701 PTSG_06764 PTSG_06764 PTSG_12503 PTSG_12503 PTSG_06978 PTSG_06978 PTSG_06665 PTSG_06665 PTSG_07591 PTSG_07591 PTSG_08012 PTSG_08012 EIF6 EIF6 PTSG_12845 PTSG_12845 PTSG_09283 PTSG_09283 PTSG_09886 PTSG_09886 PTSG_10085 PTSG_10085 PTSG_10691 PTSG_10691 PTSG_10831 PTSG_10831 PTSG_11491 PTSG_11491
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PTSG_00124RNA helicase. (522 aa)
PTSG_00374Uncharacterized protein. (852 aa)
PTSG_00419Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (262 aa)
PTSG_00435Zinc finger protein. (174 aa)
PTSG_00948Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (934 aa)
PTSG_00967Protein MAK16 homolog; Belongs to the MAK16 family. (340 aa)
PTSG_01067RRM domain-containing protein. (590 aa)
PTSG_01779Brix domain-containing protein. (461 aa)
PTSG_02034CP-type G domain-containing protein. (495 aa)
PTSG_11725ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (818 aa)
PTSG_01520Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (611 aa)
PTSG_01207CBF domain-containing protein. (1180 aa)
PTSG_02477Nle1 protein. (504 aa)
PTSG_02517DEAD/DEAH box helicase. (1034 aa)
PTSG_02548Uncharacterized protein. (690 aa)
PTSG_03014SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (880 aa)
PTSG_0318560S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (463 aa)
PTSG_03331GTP binding protein 4; Belongs to the sterol desaturase family. (635 aa)
PTSG_03333Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (679 aa)
PTSG_03361Uncharacterized protein. (269 aa)
PTSG_03403Uncharacterized protein. (1027 aa)
PTSG_03467Uncharacterized protein. (536 aa)
PTSG_04124Uncharacterized protein. (632 aa)
PTSG_0390566S pre-ribosomal particle constituent. (146 aa)
PTSG_12097Uncharacterized protein. (476 aa)
PTSG_03941NLE domain-containing protein. (102 aa)
PTSG_04552Brix domain-containing protein. (326 aa)
PTSG_04654Ribosomal protein L24E. (158 aa)
PTSG_12213Uncharacterized protein. (1010 aa)
PTSG_05295Brix domain-containing protein. (532 aa)
PTSG_05094Uncharacterized protein. (860 aa)
PTSG_05591Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (590 aa)
PTSG_05637Peptidase_M24 domain-containing protein. (372 aa)
PTSG_06419PUM-HD domain-containing protein. (759 aa)
PTSG_05801Uncharacterized protein. (485 aa)
PTSG_05853Uncharacterized protein. (481 aa)
PTSG_06701Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (718 aa)
PTSG_06764Ribosome production factor 1. (444 aa)
PTSG_12503WD_REPEATS_REGION domain-containing protein. (399 aa)
PTSG_06978Nsun6 protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (477 aa)
PTSG_06665Proliferation-associated protein 2G4. (369 aa)
PTSG_07591Uncharacterized protein. (354 aa)
PTSG_0801260S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (237 aa)
PTSG_12845Uncharacterized protein. (984 aa)
PTSG_09283Uncharacterized protein; Belongs to the DEAD box helicase family. (448 aa)
PTSG_09886RNA helicase. (649 aa)
PTSG_10085Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (1030 aa)
PTSG_10691Uncharacterized protein. (1075 aa)
PTSG_10831Uncharacterized protein. (914 aa)
PTSG_11491DEAD-box ATP-dependent RNA helicase 26; Belongs to the DEAD box helicase family. (648 aa)
Your Current Organism:
Salpingoeca rosetta
NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818
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