(13 nodes) Preribosome, large subunit precursor, and CBF/Mak21 family network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00948	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (934 aa)
	PTSG_01067	RRM domain-containing protein. (590 aa)
	PTSG_01779	Brix domain-containing protein. (461 aa)
	PTSG_02034	CP-type G domain-containing protein. (495 aa)
	PTSG_01520	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (611 aa)
	PTSG_02548	Uncharacterized protein. (690 aa)
	PTSG_03361	Uncharacterized protein. (269 aa)
	PTSG_12097	Uncharacterized protein. (476 aa)
	PTSG_03941	NLE domain-containing protein. (102 aa)
	PTSG_05094	Uncharacterized protein. (860 aa)
	PTSG_08012	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	PTSG_09886	RNA helicase. (649 aa)
	PTSG_10085	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (1030 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00948	PTSG_01067	F2TXY7	F2TYA7	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RRM domain-containing protein.	0.995
PTSG_00948	PTSG_01520	F2TXY7	F2U0K9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.994
PTSG_00948	PTSG_01779	F2TXY7	F2TYY0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Brix domain-containing protein.	0.930
PTSG_00948	PTSG_02034	F2TXY7	F2TZP2	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	CP-type G domain-containing protein.	0.990
PTSG_00948	PTSG_02548	F2TXY7	F2U2I1	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.994
PTSG_00948	PTSG_03361	F2TXY7	F2U4Y4	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.990
PTSG_00948	PTSG_03941	F2TXY7	F2U7B5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	NLE domain-containing protein.	0.974
PTSG_00948	PTSG_05094	F2TXY7	F2UAI3	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.980
PTSG_00948	PTSG_08012	F2TXY7	F2UHR3	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.950
PTSG_00948	PTSG_09886	F2TXY7	F2UNF0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RNA helicase.	0.994
PTSG_00948	PTSG_10085	F2TXY7	F2UPF9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.996
PTSG_00948	PTSG_12097	F2TXY7	F2U781	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.977
PTSG_01067	PTSG_00948	F2TYA7	F2TXY7	RRM domain-containing protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.995
PTSG_01067	PTSG_01520	F2TYA7	F2U0K9	RRM domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.994
PTSG_01067	PTSG_01779	F2TYA7	F2TYY0	RRM domain-containing protein.	Brix domain-containing protein.	0.999
PTSG_01067	PTSG_02034	F2TYA7	F2TZP2	RRM domain-containing protein.	CP-type G domain-containing protein.	0.999
PTSG_01067	PTSG_02548	F2TYA7	F2U2I1	RRM domain-containing protein.	Uncharacterized protein.	0.998
PTSG_01067	PTSG_03361	F2TYA7	F2U4Y4	RRM domain-containing protein.	Uncharacterized protein.	0.998
PTSG_01067	PTSG_03941	F2TYA7	F2U7B5	RRM domain-containing protein.	NLE domain-containing protein.	0.995
PTSG_01067	PTSG_05094	F2TYA7	F2UAI3	RRM domain-containing protein.	Uncharacterized protein.	0.987

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