Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LSM1 | LSM3 | F2U2A3 | F2TZT7 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
| LSM1 | LSM4 | F2U2A3 | F2UMI2 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
| LSM1 | LSM5 | F2U2A3 | F2TWC0 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. | 0.999 |
| LSM1 | PTSG_00236 | F2U2A3 | F2TVW9 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | DEAD box ATP-dependent RNA helicase. | 0.470 |
| LSM1 | PTSG_00671 | F2U2A3 | F2TX54 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Vasa. | 0.470 |
| LSM1 | PTSG_04630 | F2U2A3 | F2U7Z6 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Small nuclear ribonucleoprotein G. | 0.560 |
| LSM1 | PTSG_04652 | F2U2A3 | F2U815 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Uncharacterized protein. | 0.459 |
| LSM1 | PTSG_05008 | F2U2A3 | F2U989 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Sm domain-containing protein. | 0.474 |
| LSM1 | PTSG_05064 | F2U2A3 | F2U9E9 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | LSM domain-containing protein. | 0.999 |
| LSM1 | PTSG_05354 | F2U2A3 | F2UA69 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
| LSM1 | PTSG_05896 | F2U2A3 | F2UD37 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Small nuclear ribonucleoprotein Sm D3. | 0.608 |
| LSM1 | PTSG_06970 | F2U2A3 | F2UFC0 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Sm domain-containing protein. | 0.999 |
| LSM1 | PTSG_07169 | F2U2A3 | F2UE95 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | DEAD box polypeptide 47 isoform 1; Belongs to the DEAD box helicase family. | 0.470 |
| LSM1 | PTSG_07503 | F2U2A3 | F2UIX1 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | SnRNP Sm protein F. | 0.690 |
| LSM1 | PTSG_07630 | F2U2A3 | F2UHB4 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. | 0.648 |
| LSM1 | PTSG_08233 | F2U2A3 | F2UID7 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Uncharacterized protein; Belongs to the DEAD box helicase family. | 0.470 |
| LSM1 | PTSG_11191 | F2U2A3 | F2USP3 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family. | 0.470 |
| LSM1 | PTSG_12025 | F2U2A3 | F2U588 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | N-alpha-acetyltransferase 38. | 0.981 |
| LSM1 | PTSG_12357 | F2U2A3 | F2UB56 | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | Sm domain-containing protein. | 0.593 |
| LSM3 | LSM1 | F2TZT7 | F2U2A3 | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. | 0.999 |
page 1 of 404