(34 nodes) Ligand-gated ion channel activity network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_06153	Ryanodine receptor type 1. (5340 aa)
	PTSG_06359	PKD_channel domain-containing protein. (834 aa)
	PTSG_06996	Inositol 1,4,5-trisphosphate receptor type 3. (2539 aa)
	PTSG_07128	Uncharacterized protein. (2613 aa)
	PTSG_06962	Cardiac ryanodine receptor. (2479 aa)
	PTSG_07655	Type I inositol triphosphate receptor. (2612 aa)
	PTSG_07737	Hyperpolarization-activated ion channel protein. (849 aa)
	PTSG_08486	IRK_C domain-containing protein. (598 aa)
	PTSG_08626	ANK_REP_REGION domain-containing protein. (1066 aa)
	PTSG_08647	IRK_C domain-containing protein. (682 aa)
	PTSG_05446	Nudix hydrolase domain-containing protein. (1310 aa)
	PTSG_09597	Cardiac ryanodine receptor. (2637 aa)
	PTSG_11274	Nudt9 protein. (1666 aa)
	PTSG_13019	RIH_assoc domain-containing protein. (1051 aa)
	PTSG_13018	Uncharacterized protein. (1585 aa)
	PTSG_09163	LSDAT_euk domain-containing protein. (1260 aa)
	PTSG_09398	Uncharacterized protein. (233 aa)
	PTSG_09605	EF-hand domain-containing protein. (1009 aa)
	PTSG_01969	Uncharacterized protein. (647 aa)
	PTSG_01970	Nudix-type domain-containing protein 9 isoform b. (1093 aa)
	PTSG_01277	Uncharacterized protein. (472 aa)
	PTSG_01342	G-protein-coupled inward rectifier potassium channel. (838 aa)
	PTSG_01364	Uncharacterized protein. (739 aa)
	PTSG_02461	Uncharacterized protein. (2595 aa)
	PTSG_02729	ADP-ribose pyrophosphatase. (1442 aa)
	PTSG_04102	p2X purinoceptor. (427 aa)
	PTSG_04281	Uncharacterized protein. (2909 aa)
	PTSG_04686	Uncharacterized protein. (798 aa)
	PTSG_04687	Uncharacterized protein. (936 aa)
	PTSG_04688	RYDR_ITPR domain-containing protein. (225 aa)
	PTSG_04689	Uncharacterized protein. (525 aa)
	PTSG_04761	Ankyrin repeat domain-containing protein. (1154 aa)
	PTSG_05447	Nudix-type domain-containing protein 9 isoform b. (1520 aa)
	PTSG_05449	Nudt9 protein. (1494 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_01969	PTSG_04761	F2TZH4	F2U9M1	Uncharacterized protein.	Ankyrin repeat domain-containing protein.	0.402
PTSG_01969	PTSG_06359	F2TZH4	F2UCP2	Uncharacterized protein.	PKD_channel domain-containing protein.	0.601
PTSG_01969	PTSG_08626	F2TZH4	F2UK79	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.402
PTSG_01970	PTSG_04761	F2TZH5	F2U9M1	Nudix-type domain-containing protein 9 isoform b.	Ankyrin repeat domain-containing protein.	0.402
PTSG_01970	PTSG_06359	F2TZH5	F2UCP2	Nudix-type domain-containing protein 9 isoform b.	PKD_channel domain-containing protein.	0.601
PTSG_01970	PTSG_08626	F2TZH5	F2UK79	Nudix-type domain-containing protein 9 isoform b.	ANK_REP_REGION domain-containing protein.	0.402
PTSG_02729	PTSG_04761	F2U348	F2U9M1	ADP-ribose pyrophosphatase.	Ankyrin repeat domain-containing protein.	0.402
PTSG_02729	PTSG_06359	F2U348	F2UCP2	ADP-ribose pyrophosphatase.	PKD_channel domain-containing protein.	0.601
PTSG_02729	PTSG_08626	F2U348	F2UK79	ADP-ribose pyrophosphatase.	ANK_REP_REGION domain-containing protein.	0.402
PTSG_04761	PTSG_01969	F2U9M1	F2TZH4	Ankyrin repeat domain-containing protein.	Uncharacterized protein.	0.402
PTSG_04761	PTSG_01970	F2U9M1	F2TZH5	Ankyrin repeat domain-containing protein.	Nudix-type domain-containing protein 9 isoform b.	0.402
PTSG_04761	PTSG_02729	F2U9M1	F2U348	Ankyrin repeat domain-containing protein.	ADP-ribose pyrophosphatase.	0.402
PTSG_04761	PTSG_05446	F2U9M1	F2UB86	Ankyrin repeat domain-containing protein.	Nudix hydrolase domain-containing protein.	0.402
PTSG_04761	PTSG_05447	F2U9M1	F2UB87	Ankyrin repeat domain-containing protein.	Nudix-type domain-containing protein 9 isoform b.	0.402
PTSG_04761	PTSG_05449	F2U9M1	F2UB89	Ankyrin repeat domain-containing protein.	Nudt9 protein.	0.402
PTSG_04761	PTSG_06359	F2U9M1	F2UCP2	Ankyrin repeat domain-containing protein.	PKD_channel domain-containing protein.	0.546
PTSG_04761	PTSG_09163	F2U9M1	F2UMW9	Ankyrin repeat domain-containing protein.	LSDAT_euk domain-containing protein.	0.402
PTSG_04761	PTSG_11274	F2U9M1	F2USX8	Ankyrin repeat domain-containing protein.	Nudt9 protein.	0.402
PTSG_05446	PTSG_04761	F2UB86	F2U9M1	Nudix hydrolase domain-containing protein.	Ankyrin repeat domain-containing protein.	0.402
PTSG_05446	PTSG_06359	F2UB86	F2UCP2	Nudix hydrolase domain-containing protein.	PKD_channel domain-containing protein.	0.601

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