STRINGSTRING
PTSG_05815 PTSG_05815 PTSG_05854 PTSG_05854 PTSG_06022 PTSG_06022 PTSG_07246 PTSG_07246 PTSG_07253 PTSG_07253 PTSG_06732 PTSG_06732 PTSG_06852 PTSG_06852 PTSG_06495 PTSG_06495 PTSG_06563 PTSG_06563 PTSG_00100 PTSG_00100 PTSG_00237 PTSG_00237 PTSG_11567 PTSG_11567 PTSG_00318 PTSG_00318 PTSG_00580 PTSG_00580 PTSG_00620 PTSG_00620 PTSG_04704 PTSG_04704 PTSG_00800 PTSG_00800 PTSG_11647 PTSG_11647 PTSG_00926 PTSG_00926 PTSG_00931 PTSG_00931 PTSG_01005 PTSG_01005 PTSG_01022 PTSG_01022 PTSG_01734 PTSG_01734 PTSG_01779 PTSG_01779 PTSG_02041 PTSG_02041 PTSG_01357 PTSG_01357 PTSG_01564 PTSG_01564 PTSG_01147 PTSG_01147 PTSG_11836 PTSG_11836 PTSG_02259 PTSG_02259 PTSG_02350 PTSG_02350 PTSG_02477 PTSG_02477 PTSG_03123 PTSG_03123 PTSG_03139 PTSG_03139 PTSG_08040 PTSG_08040 EIF6 EIF6 PTSG_12628 PTSG_12628 PTSG_07671 PTSG_07671 PTSG_07630 PTSG_07630 PTSG_07534 PTSG_07534 PTSG_07853 PTSG_07853 PTSG_04652 PTSG_04652 PTSG_04979 PTSG_04979 PTSG_03346 PTSG_03346 PTSG_03363 PTSG_03363 PTSG_12088 PTSG_12088 PTSG_00746 PTSG_00746 PTSG_12306 PTSG_12306 PTSG_05432 PTSG_05432 PTSG_05090 PTSG_05090 PTSG_06249 PTSG_06249 PTSG_06357 PTSG_06357 PTSG_05801 PTSG_05801 PTSG_08716 PTSG_08716 PTSG_08662 PTSG_08662 PTSG_08609 PTSG_08609 PTSG_08410 PTSG_08410 PTSG_07503 PTSG_07503 PTSG_07502 PTSG_07502 PTSG_08163 PTSG_08163 PTSG_08110 PTSG_08110 PTSG_08053 PTSG_08053 PTSG_12096 PTSG_12096 PTSG_04552 PTSG_04552 PTSG_04630 PTSG_04630 PTSG_11475 PTSG_11475 PTSG_11456 PTSG_11456 PTSG_10952 PTSG_10952 PTSG_10939 PTSG_10939 PTSG_10643 PTSG_10643 PTSG_10589 PTSG_10589 PTSG_13117 PTSG_13117 PTSG_10905 PTSG_10905 PTSG_05001 PTSG_05001 PTSG_10220 PTSG_10220 PTSG_10802 PTSG_10802 PTSG_09269 PTSG_09269 PTSG_09209 PTSG_09209 LSM4 LSM4 PTSG_09365 PTSG_09365
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PTSG_05815Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (219 aa)
PTSG_05854CS domain-containing protein. (460 aa)
PTSG_06022HIT-type domain-containing protein. (344 aa)
PTSG_07246Uncharacterized protein. (231 aa)
PTSG_07253Ribosomal protein L5. (329 aa)
PTSG_06732SFM domain-containing protein. (383 aa)
PTSG_0685230S ribosomal protein S7. (157 aa)
PTSG_06495Uncharacterized protein. (328 aa)
PTSG_06563Uncharacterized protein. (509 aa)
PTSG_00100Splicing factor Prp8. (2525 aa)
PTSG_0023740S ribosomal protein S19. (147 aa)
PTSG_11567CMGC/SRPK protein kinase. (648 aa)
PTSG_00318Napor protein short isoform. (353 aa)
PTSG_00580Uncharacterized protein. (283 aa)
PTSG_00620ZNHIT2 protein. (282 aa)
PTSG_04704U4/U6.U5 tri-snRNP-associated protein 2. (557 aa)
PTSG_00800Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (216 aa)
PTSG_11647Eukaryotic translation initiation factor 2 subunit 3. (469 aa)
PTSG_00926Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (637 aa)
PTSG_00931PRP6 pre-mRNA processing factor 6. (926 aa)
PTSG_01005Uncharacterized protein. (613 aa)
PTSG_01022Ribosomal protein L23a. (152 aa)
PTSG_01734Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (450 aa)
PTSG_01779Brix domain-containing protein. (461 aa)
PTSG_02041ANK_REP_REGION domain-containing protein. (1059 aa)
PTSG_01357HIT-type domain-containing protein. (182 aa)
PTSG_01564Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (69 aa)
PTSG_01147RuvB-like helicase; Belongs to the RuvB family. (513 aa)
PTSG_11836Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4118 aa)
PTSG_0225960S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
PTSG_02350Eukaryotic translation initiation factor 3 subunit G. (241 aa)
PTSG_02477Nle1 protein. (504 aa)
PTSG_03123Splicing factor 3b. (1242 aa)
PTSG_0313960S ribosomal protein L10-B. (214 aa)
PTSG_08040Uncharacterized protein. (312 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (237 aa)
PTSG_1262830S ribosomal protein S11. (244 aa)
PTSG_07671Pre-mRNA-splicing factor SYF1. (832 aa)
PTSG_07630Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (161 aa)
PTSG_07534MPN domain-containing protein. (241 aa)
PTSG_07853KH type-2 domain-containing protein. (412 aa)
PTSG_04652Uncharacterized protein. (976 aa)
PTSG_04979RuvB-like helicase; Belongs to the RuvB family. (455 aa)
PTSG_03346Uncharacterized protein. (224 aa)
PTSG_03363RRM domain-containing protein. (314 aa)
PTSG_12088Uncharacterized protein. (339 aa)
PTSG_00746Tudor domain-containing protein. (280 aa)
PTSG_12306PCI domain-containing protein. (393 aa)
PTSG_05432Uncharacterized protein. (1211 aa)
PTSG_05090Uncharacterized protein. (427 aa)
PTSG_0624960S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (243 aa)
PTSG_06357U4/U6 small nuclear ribonucleoprotein Prp31. (503 aa)
PTSG_05801Uncharacterized protein. (485 aa)
PTSG_0871640S ribosomal protein S27. (85 aa)
PTSG_08662Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (203 aa)
PTSG_08609U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (299 aa)
PTSG_08410PCI domain-containing protein; Belongs to the eIF-3 subunit C family. (915 aa)
PTSG_07503SnRNP Sm protein F. (70 aa)
PTSG_07502Crooked neck protein. (732 aa)
PTSG_08163Splicing factor 3a. (233 aa)
PTSG_08110RRM domain-containing protein. (508 aa)
PTSG_08053Uncharacterized protein. (1011 aa)
PTSG_12096Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (326 aa)
PTSG_04552Brix domain-containing protein. (326 aa)
PTSG_04630Small nuclear ribonucleoprotein G. (76 aa)
PTSG_11475PCI domain-containing protein. (198 aa)
PTSG_11456Uncharacterized protein. (493 aa)
PTSG_10952ASCC3L1 protein. (2150 aa)
PTSG_10939Coiled-coil domain-containing protein 94. (384 aa)
PTSG_10643TIR domain-containing protein. (1879 aa)
PTSG_10589JAB_MPN domain-containing protein. (705 aa)
PTSG_13117Uncharacterized protein. (5131 aa)
PTSG_10905Eukaryotic translation initiation factor 3 subunit A. (1106 aa)
PTSG_05001CS domain-containing protein. (618 aa)
PTSG_10220Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (533 aa)
PTSG_10802RPOL4c domain-containing protein. (153 aa)
PTSG_09269PUA domain-containing protein. (704 aa)
PTSG_09209eIF5 protein. (442 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (115 aa)
PTSG_09365JAB_MPN domain-containing protein. (373 aa)
Your Current Organism:
Salpingoeca rosetta
NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818
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