(9 nodes) Intraciliary retrograde transport network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_11988	WD_REPEATS_REGION domain-containing protein. (1211 aa)
	PTSG_12128	eIF2A domain-containing protein. (1380 aa)
	PTSG_04339	Uncharacterized protein. (1150 aa)
	PTSG_04872	Uncharacterized protein. (163 aa)
	PTSG_05546	WD repeat-containing protein 35. (1163 aa)
	PTSG_07259	WD_REPEATS_REGION domain-containing protein. (523 aa)
	PTSG_12640	Uncharacterized protein. (1330 aa)
	PTSG_08780	Uncharacterized protein. (379 aa)
	PTSG_10740	Uncharacterized protein. (1352 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_04339	PTSG_04872	F2U896	F2U8V6	Uncharacterized protein.	Uncharacterized protein.	0.539
PTSG_04339	PTSG_05546	F2U896	F2UBI5	Uncharacterized protein.	WD repeat-containing protein 35.	0.706
PTSG_04339	PTSG_07259	F2U896	F2UEI4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.978
PTSG_04339	PTSG_08780	F2U896	F2UKP0	Uncharacterized protein.	Uncharacterized protein.	0.979
PTSG_04339	PTSG_10740	F2U896	F2UQ88	Uncharacterized protein.	Uncharacterized protein.	0.567
PTSG_04339	PTSG_11988	F2U896	F2U4R0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.462
PTSG_04339	PTSG_12128	F2U896	F2U6M0	Uncharacterized protein.	eIF2A domain-containing protein.	0.667
PTSG_04339	PTSG_12640	F2U896	F2UGD8	Uncharacterized protein.	Uncharacterized protein.	0.636
PTSG_04872	PTSG_04339	F2U8V6	F2U896	Uncharacterized protein.	Uncharacterized protein.	0.539
PTSG_04872	PTSG_05546	F2U8V6	F2UBI5	Uncharacterized protein.	WD repeat-containing protein 35.	0.982
PTSG_04872	PTSG_07259	F2U8V6	F2UEI4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.655
PTSG_04872	PTSG_08780	F2U8V6	F2UKP0	Uncharacterized protein.	Uncharacterized protein.	0.465
PTSG_04872	PTSG_10740	F2U8V6	F2UQ88	Uncharacterized protein.	Uncharacterized protein.	0.971
PTSG_04872	PTSG_11988	F2U8V6	F2U4R0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.976
PTSG_04872	PTSG_12128	F2U8V6	F2U6M0	Uncharacterized protein.	eIF2A domain-containing protein.	0.971
PTSG_04872	PTSG_12640	F2U8V6	F2UGD8	Uncharacterized protein.	Uncharacterized protein.	0.941
PTSG_05546	PTSG_04339	F2UBI5	F2U896	WD repeat-containing protein 35.	Uncharacterized protein.	0.706
PTSG_05546	PTSG_04872	F2UBI5	F2U8V6	WD repeat-containing protein 35.	Uncharacterized protein.	0.982
PTSG_05546	PTSG_07259	F2UBI5	F2UEI4	WD repeat-containing protein 35.	WD_REPEATS_REGION domain-containing protein.	0.598
PTSG_05546	PTSG_08780	F2UBI5	F2UKP0	WD repeat-containing protein 35.	Uncharacterized protein.	0.758

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