(76 nodes) Positive regulation of transcription by RNA polymerase II network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_01585	BZIP domain-containing protein. (646 aa)
	PTSG_00020	Uncharacterized protein. (777 aa)
	PTSG_00442	Transcription activator. (1106 aa)
	PTSG_00772	Uncharacterized protein. (840 aa)
	PTSG_00805	Protein kinase domain-containing protein. (1538 aa)
	PTSG_00973	Uncharacterized protein. (720 aa)
	PTSG_01016	GATA-type domain-containing protein. (547 aa)
	PTSG_01352	Uncharacterized protein. (280 aa)
	PTSG_11730	TPR_REGION domain-containing protein. (401 aa)
	PTSG_02215	Uncharacterized protein. (667 aa)
	PTSG_02277	Uncharacterized protein. (490 aa)
	PTSG_02327	CBFD_NFYB_HMF domain-containing protein. (95 aa)
	PTSG_02414	Uncharacterized protein. (813 aa)
	PTSG_02445	RUN domain-containing protein. (797 aa)
	PTSG_02514	Uncharacterized protein. (322 aa)
	PTSG_02749	GATA-type domain-containing protein. (496 aa)
	PTSG_11970	YTH domain-containing protein. (847 aa)
	PTSG_03242	Uncharacterized protein. (721 aa)
	PTSG_11998	BCAS3 domain-containing protein. (912 aa)
	PTSG_12015	Uncharacterized protein. (1704 aa)
	PTSG_03407	Uncharacterized protein. (866 aa)
	PTSG_03430	SAM_3 domain-containing protein. (1095 aa)
	PTSG_03684	TMF_TATA_bd domain-containing protein. (868 aa)
	PTSG_04084	Signal transducer and activator of transcription. (868 aa)
	PTSG_04178	Uncharacterized protein. (1398 aa)
	PTSG_04179	BZIP domain-containing protein. (957 aa)
	PTSG_04225	S1 motif domain-containing protein. (1774 aa)
	PTSG_03953	26S proteasome regulatory complex ATPase RPT4; Belongs to the AAA ATPase family. (391 aa)
	PTSG_03996	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (460 aa)
	PTSG_04335	Uncharacterized protein. (1335 aa)
	PTSG_04497	SAM domain-containing protein. (613 aa)
	PTSG_04951	Uncharacterized protein. (831 aa)
	PTSG_04998	Uncharacterized protein. (804 aa)
	PTSG_05311	SNF2 family DNA-dependent ATPase. (2192 aa)
	PTSG_05772	WD_REPEATS_REGION domain-containing protein. (1044 aa)
	PTSG_12328	Uncharacterized protein. (876 aa)
	PTSG_12333	Uncharacterized protein. (1839 aa)
	PTSG_05530	Uncharacterized protein. (242 aa)
	PTSG_05604	Nicotinamide phosphoribosyltransferase. (297 aa)
	PTSG_06417	Uncharacterized protein. (261 aa)
	PTSG_05978	Amine oxidase. (479 aa)
	PTSG_07137	CMGC/CDK protein kinase. (501 aa)
	PTSG_07243	Uncharacterized protein. (996 aa)
	PTSG_06902	Uncharacterized protein. (696 aa)
	PTSG_06985	Uncharacterized protein. (390 aa)
	PTSG_06661	Snf family helicase. (3098 aa)
	PTSG_06453	CBFD_NFYB_HMF domain-containing protein. (159 aa)
	PTSG_06563	Uncharacterized protein. (509 aa)
	PTSG_07923	CSRNP_N domain-containing protein. (384 aa)
	PTSG_07533	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	PTSG_07559	Mixed-lineage leukemia protein. (2027 aa)
	PTSG_07599	SAM domain-containing protein. (351 aa)
	PTSG_08005	Deacetylase sirtuin-type domain-containing protein. (372 aa)
	PTSG_08041	Uncharacterized protein. (1846 aa)
	PTSG_08184	FHA domain-containing protein. (216 aa)
	PTSG_12693	Uncharacterized protein. (3557 aa)
	PTSG_08257	Uncharacterized protein. (1542 aa)
	PTSG_08337	Transcription factor. (516 aa)
	PTSG_08455	Nucleoplasmin domain-containing protein. (351 aa)
	PTSG_08579	RB_A domain-containing protein. (816 aa)
	PTSG_09511	Uncharacterized protein. (865 aa)
	PTSG_09620	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (362 aa)
	PTSG_09020	O-linked N-acetylglucosamine transferase. (1496 aa)
	PTSG_09454	Peptidase_M50 domain-containing protein. (588 aa)
	PTSG_09837	RING-type domain-containing protein. (989 aa)
	PTSG_10455	Uncharacterized protein. (1002 aa)
	PTSG_13058	AAA domain-containing protein. (1278 aa)
	PTSG_13061	Uncharacterized protein. (1031 aa)
	PTSG_10709	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (397 aa)
	PTSG_10173	CMGC/CDK protein kinase; Belongs to the protein kinase superfamily. (439 aa)
	PTSG_10211	Uncharacterized protein. (431 aa)
	PTSG_10267	BRG1 protein. (1726 aa)
	PTSG_10859	Uncharacterized protein. (828 aa)
	PTSG_11095	MADS box transcription factor Mcm1. (574 aa)
	PTSG_11444	Uncharacterized protein. (162 aa)
	PTSG_10940	MYND-type domain-containing protein. (770 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00020	PTSG_03996	F2TVA8	F2U7H2	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.456
PTSG_00020	PTSG_09620	F2TVA8	F2ULI6	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.456
PTSG_00020	PTSG_10709	F2TVA8	F2UQ57	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.456
PTSG_00442	PTSG_02277	F2TWH7	F2U1R0	Transcription activator.	Uncharacterized protein.	0.498
PTSG_00442	PTSG_03953	F2TWH7	F2U7C8	Transcription activator.	26S proteasome regulatory complex ATPase RPT4; Belongs to the AAA ATPase family.	0.417
PTSG_00442	PTSG_07243	F2TWH7	F2UEG8	Transcription activator.	Uncharacterized protein.	0.457
PTSG_00442	PTSG_08184	F2TWH7	F2UI88	Transcription activator.	FHA domain-containing protein.	0.404
PTSG_00772	PTSG_08579	F2TXF4	F2UK34	Uncharacterized protein.	RB_A domain-containing protein.	0.410
PTSG_00772	PTSG_10859	F2TXF4	F2URK9	Uncharacterized protein.	Uncharacterized protein.	0.498
PTSG_00805	PTSG_02277	F2TXJ0	F2U1R0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.684
PTSG_00805	PTSG_04225	F2TXJ0	F2U6Y5	Protein kinase domain-containing protein.	S1 motif domain-containing protein.	0.620
PTSG_00805	PTSG_06563	F2TXJ0	F2UG61	Protein kinase domain-containing protein.	Uncharacterized protein.	0.649
PTSG_00805	PTSG_07137	F2TXJ0	F2UE59	Protein kinase domain-containing protein.	CMGC/CDK protein kinase.	0.665
PTSG_00805	PTSG_07243	F2TXJ0	F2UEG8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.758
PTSG_00805	PTSG_10173	F2TXJ0	F2UQI4	Protein kinase domain-containing protein.	CMGC/CDK protein kinase; Belongs to the protein kinase superfamily.	0.665
PTSG_01016	PTSG_07533	F2TY54	F2UH15	GATA-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.455
PTSG_01585	PTSG_09454	F2TYD4	F2UMN6	BZIP domain-containing protein.	Peptidase_M50 domain-containing protein.	0.788
PTSG_02277	PTSG_00442	F2U1R0	F2TWH7	Uncharacterized protein.	Transcription activator.	0.498
PTSG_02277	PTSG_00805	F2U1R0	F2TXJ0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.684
PTSG_02277	PTSG_04225	F2U1R0	F2U6Y5	Uncharacterized protein.	S1 motif domain-containing protein.	0.997

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