(26 nodes) SWI/SNF superfamily-type complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_12991	NFRKB_winged domain-containing protein. (772 aa)
	PTSG_10267	BRG1 protein. (1726 aa)
	PTSG_00020	Uncharacterized protein. (777 aa)
	PTSG_00780	Uncharacterized protein. (773 aa)
	PTSG_01032	RFX-type winged-helix domain-containing protein. (1038 aa)
	PTSG_11773	SANT_DAMP1_like domain-containing protein. (597 aa)
	PTSG_01571	Uncharacterized protein. (1083 aa)
	PTSG_01126	SWIB domain-containing protein. (436 aa)
	PTSG_01147	RuvB-like helicase; Belongs to the RuvB family. (513 aa)
	PTSG_02326	Uncharacterized protein; Belongs to the actin family. (406 aa)
	PTSG_02424	Uncharacterized protein. (204 aa)
	PTSG_03093	HMG box domain-containing protein. (543 aa)
	PTSG_04083	Uncharacterized protein. (2008 aa)
	PTSG_04175	Uncharacterized protein; Belongs to the actin family. (778 aa)
	PTSG_04234	Uncharacterized protein. (285 aa)
	PTSG_04242	Uncharacterized protein. (396 aa)
	PTSG_04268	Uncharacterized protein; Belongs to the actin family. (676 aa)
	PTSG_04375	Uncharacterized protein. (1669 aa)
	PTSG_04979	RuvB-like helicase; Belongs to the RuvB family. (455 aa)
	PTSG_04709	Uncharacterized protein. (1576 aa)
	PTSG_06050	Uncharacterized protein. (1088 aa)
	PTSG_12481	Uncharacterized protein; Belongs to the actin family. (455 aa)
	PTSG_06661	Snf family helicase. (3098 aa)
	PTSG_08184	FHA domain-containing protein. (216 aa)
	PTSG_07415	PAPA-1 domain-containing protein. (284 aa)
	PTSG_08750	Uncharacterized protein. (422 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00020	PTSG_01147	F2TVA8	F2U0Y1	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.817
PTSG_00020	PTSG_02424	F2TVA8	F2U261	Uncharacterized protein.	Uncharacterized protein.	0.850
PTSG_00020	PTSG_04979	F2TVA8	F2U963	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.854
PTSG_00020	PTSG_11773	F2TVA8	F2TYR1	Uncharacterized protein.	SANT_DAMP1_like domain-containing protein.	0.797
PTSG_00020	PTSG_12481	F2TVA8	F2UEQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.697
PTSG_00780	PTSG_01032	F2TXG4	F2TY71	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.719
PTSG_00780	PTSG_01126	F2TXG4	F2U0W1	Uncharacterized protein.	SWIB domain-containing protein.	0.899
PTSG_00780	PTSG_04083	F2TXG4	F2U6J3	Uncharacterized protein.	Uncharacterized protein.	0.722
PTSG_00780	PTSG_04175	F2TXG4	F2U6T7	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.407
PTSG_00780	PTSG_04375	F2TXG4	F2U8D2	Uncharacterized protein.	Uncharacterized protein.	0.722
PTSG_00780	PTSG_06050	F2TXG4	F2UDJ2	Uncharacterized protein.	Uncharacterized protein.	0.746
PTSG_00780	PTSG_12481	F2TXG4	F2UEQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.883
PTSG_01032	PTSG_00780	F2TY71	F2TXG4	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.719
PTSG_01032	PTSG_01126	F2TY71	F2U0W1	RFX-type winged-helix domain-containing protein.	SWIB domain-containing protein.	0.902
PTSG_01032	PTSG_04083	F2TY71	F2U6J3	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.922
PTSG_01032	PTSG_04242	F2TY71	F2U702	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.719
PTSG_01032	PTSG_04375	F2TY71	F2U8D2	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.922
PTSG_01032	PTSG_04709	F2TY71	F2U9H3	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.719
PTSG_01032	PTSG_06050	F2TY71	F2UDJ2	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.825
PTSG_01032	PTSG_08750	F2TY71	F2UKK9	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.719

page 1 of 11

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About