(41 nodes) Preribosome network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00069	Uncharacterized protein. (738 aa)
	PTSG_00415	U3 small nucleolar ribonucleoprotein IMP3. (178 aa)
	PTSG_00800	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (216 aa)
	PTSG_00829	Uncharacterized protein. (255 aa)
	PTSG_00898	U3 small nucleolar ribonucleoprotein IMP4. (283 aa)
	PTSG_00909	WD_REPEATS_REGION domain-containing protein. (898 aa)
	PTSG_00948	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (934 aa)
	PTSG_00967	Protein MAK16 homolog; Belongs to the MAK16 family. (340 aa)
	PTSG_01601	Uncharacterized protein. (562 aa)
	PTSG_01917	Uncharacterized protein. (739 aa)
	PTSG_01250	Uncharacterized protein. (859 aa)
	PTSG_01466	Uncharacterized protein. (1170 aa)
	PTSG_02188	NUC153 domain-containing protein. (762 aa)
	PTSG_02548	Uncharacterized protein. (690 aa)
	PTSG_03092	Sas10 domain-containing protein. (541 aa)
	PTSG_03107	Uncharacterized protein. (484 aa)
	PTSG_03192	WD_REPEATS_REGION domain-containing protein. (898 aa)
	PTSG_03457	Uncharacterized protein. (654 aa)
	PTSG_03712	Uncharacterized protein. (1339 aa)
	PTSG_03905	66S pre-ribosomal particle constituent. (146 aa)
	PTSG_04011	DRIM domain-containing protein. (351 aa)
	PTSG_04654	Ribosomal protein L24E. (158 aa)
	PTSG_04684	Atypical/RIO/RIO2 protein kinase. (590 aa)
	PTSG_04968	WD_REPEATS_REGION domain-containing protein. (565 aa)
	PTSG_04794	WD_REPEATS_REGION domain-containing protein. (643 aa)
	PTSG_12358	DRIM domain-containing protein. (2776 aa)
	PTSG_05475	Uncharacterized protein. (497 aa)
	PTSG_07198	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (318 aa)
	PTSG_07209	DRIM domain-containing protein. (510 aa)
	PTSG_06452	Uncharacterized protein. (163 aa)
	PTSG_06512	PINc domain-containing protein. (206 aa)
	PTSG_08012	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	PTSG_08053	Uncharacterized protein. (1011 aa)
	PTSG_08255	Uncharacterized protein. (344 aa)
	PTSG_07428	Uncharacterized protein. (849 aa)
	PTSG_09438	Uncharacterized protein. (521 aa)
	PTSG_09834	Uncharacterized protein. (457 aa)
	PTSG_10691	Uncharacterized protein. (1075 aa)
	PTSG_10152	Riok3 protein. (741 aa)
	PTSG_10269	Uncharacterized protein. (93 aa)
	PTSG_10831	Uncharacterized protein. (914 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00069	PTSG_00415	F2TVF7	F2TWE9	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.967
PTSG_00069	PTSG_00800	F2TVF7	F2TXI5	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.572
PTSG_00069	PTSG_00829	F2TVF7	F2TXL3	Uncharacterized protein.	Uncharacterized protein.	0.873
PTSG_00069	PTSG_00898	F2TVF7	F2TXT2	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein IMP4.	0.969
PTSG_00069	PTSG_00909	F2TVF7	F2TXU5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
PTSG_00069	PTSG_00948	F2TVF7	F2TXY7	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.969
PTSG_00069	PTSG_00967	F2TVF7	F2TY05	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.803
PTSG_00069	PTSG_01250	F2TVF7	F2TZT2	Uncharacterized protein.	Uncharacterized protein.	0.912
PTSG_00069	PTSG_01466	F2TVF7	F2U0F2	Uncharacterized protein.	Uncharacterized protein.	0.999
PTSG_00069	PTSG_01917	F2TVF7	F2TZC0	Uncharacterized protein.	Uncharacterized protein.	0.997
PTSG_00069	PTSG_02188	F2TVF7	F2U1G8	Uncharacterized protein.	NUC153 domain-containing protein.	0.989
PTSG_00069	PTSG_02548	F2TVF7	F2U2I1	Uncharacterized protein.	Uncharacterized protein.	0.952
PTSG_00069	PTSG_03092	F2TVF7	F2U479	Uncharacterized protein.	Sas10 domain-containing protein.	0.987
PTSG_00069	PTSG_03107	F2TVF7	F2U491	Uncharacterized protein.	Uncharacterized protein.	0.987
PTSG_00069	PTSG_03192	F2TVF7	F2U4H4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.979
PTSG_00069	PTSG_03457	F2TVF7	F2U592	Uncharacterized protein.	Uncharacterized protein.	0.917
PTSG_00069	PTSG_03712	F2TVF7	F2U6D3	Uncharacterized protein.	Uncharacterized protein.	0.999
PTSG_00069	PTSG_03905	F2TVF7	F2U778	Uncharacterized protein.	66S pre-ribosomal particle constituent.	0.510
PTSG_00069	PTSG_04011	F2TVF7	F2U7I6	Uncharacterized protein.	DRIM domain-containing protein.	0.941
PTSG_00069	PTSG_04654	F2TVF7	F2U817	Uncharacterized protein.	Ribosomal protein L24E.	0.874

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