(18 nodes) INO80-type complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_07109	HIT-type domain-containing protein. (278 aa)
	PTSG_11773	SANT_DAMP1_like domain-containing protein. (597 aa)
	PTSG_05393	Uncharacterized protein. (760 aa)
	PTSG_10267	BRG1 protein. (1726 aa)
	PTSG_04268	Uncharacterized protein; Belongs to the actin family. (676 aa)
	PTSG_04243	Uncharacterized protein. (582 aa)
	PTSG_04175	Uncharacterized protein; Belongs to the actin family. (778 aa)
	PTSG_03649	Uncharacterized protein. (718 aa)
	PTSG_02424	Uncharacterized protein. (204 aa)
	PTSG_11879	Uncharacterized protein. (978 aa)
	PTSG_12819	Uncharacterized protein. (1757 aa)
	PTSG_02326	Uncharacterized protein; Belongs to the actin family. (406 aa)
	PTSG_11372	Uncharacterized protein. (717 aa)
	PTSG_07415	PAPA-1 domain-containing protein. (284 aa)
	PTSG_12991	NFRKB_winged domain-containing protein. (772 aa)
	PTSG_06661	Snf family helicase. (3098 aa)
	PTSG_00020	Uncharacterized protein. (777 aa)
	PTSG_01004	Uncharacterized protein. (940 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00020	PTSG_02424	F2TVA8	F2U261	Uncharacterized protein.	Uncharacterized protein.	0.850
PTSG_00020	PTSG_11773	F2TVA8	F2TYR1	Uncharacterized protein.	SANT_DAMP1_like domain-containing protein.	0.797
PTSG_02326	PTSG_02424	F2U1V8	F2U261	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.741
PTSG_02326	PTSG_03649	F2U1V8	F2U672	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02326	PTSG_04243	F2U1V8	F2U703	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02326	PTSG_05393	F2U1V8	F2UAB0	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02326	PTSG_07109	F2U1V8	F2UE31	Uncharacterized protein; Belongs to the actin family.	HIT-type domain-containing protein.	0.991
PTSG_02326	PTSG_11372	F2U1V8	F2UT76	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02326	PTSG_11773	F2U1V8	F2TYR1	Uncharacterized protein; Belongs to the actin family.	SANT_DAMP1_like domain-containing protein.	0.795
PTSG_02326	PTSG_11879	F2U1V8	F2U253	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02326	PTSG_12819	F2U1V8	F2ULU3	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.487
PTSG_02424	PTSG_00020	F2U261	F2TVA8	Uncharacterized protein.	Uncharacterized protein.	0.850
PTSG_02424	PTSG_02326	F2U261	F2U1V8	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.741
PTSG_02424	PTSG_03649	F2U261	F2U672	Uncharacterized protein.	Uncharacterized protein.	0.416
PTSG_02424	PTSG_04243	F2U261	F2U703	Uncharacterized protein.	Uncharacterized protein.	0.416
PTSG_02424	PTSG_05393	F2U261	F2UAB0	Uncharacterized protein.	Uncharacterized protein.	0.416
PTSG_02424	PTSG_07109	F2U261	F2UE31	Uncharacterized protein.	HIT-type domain-containing protein.	0.922
PTSG_02424	PTSG_11372	F2U261	F2UT76	Uncharacterized protein.	Uncharacterized protein.	0.416
PTSG_02424	PTSG_11773	F2U261	F2TYR1	Uncharacterized protein.	SANT_DAMP1_like domain-containing protein.	0.986
PTSG_02424	PTSG_11879	F2U261	F2U253	Uncharacterized protein.	Uncharacterized protein.	0.416

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