(29 nodes) Cadherin-like superfamily network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_06458	Cadherin. (3697 aa)
	PTSG_11235	Tyrosine phosphatase. (8158 aa)
	PTSG_12970	Uncharacterized protein. (10593 aa)
	PTSG_09048	CA domain-containing protein. (408 aa)
	PTSG_08964	Uncharacterized protein. (996 aa)
	PTSG_08442	PRCDH1 protein. (9674 aa)
	PTSG_08395	Uncharacterized protein. (2026 aa)
	PTSG_08394	VWFA domain-containing protein. (454 aa)
	PTSG_07827	Uncharacterized protein. (1886 aa)
	PTSG_06480	Uncharacterized protein. (843 aa)
	PTSG_06479	EGF-like domain-containing protein. (597 aa)
	PTSG_06655	NOTCH2 protein. (7004 aa)
	PTSG_06730	Notch-1. (6376 aa)
	PTSG_07016	Uncharacterized protein. (8457 aa)
	PTSG_12381	Uncharacterized protein. (2415 aa)
	PTSG_05882	Uncharacterized protein. (1856 aa)
	PTSG_05657	Uncharacterized protein. (2254 aa)
	PTSG_05491	TK/RTKC protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (2190 aa)
	PTSG_05128	TK/RTKC protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (3207 aa)
	PTSG_04390	Uncharacterized protein. (1838 aa)
	PTSG_03209	NOTCH2 protein. (2421 aa)
	PTSG_02915	FAT3 protein. (7553 aa)
	PTSG_01501	Uncharacterized protein. (565 aa)
	PTSG_01465	NOTCH2 protein. (2239 aa)
	PTSG_01986	NOTCH2 protein. (1763 aa)
	PTSG_01973	Protocadherin gamma B6. (1024 aa)
	PTSG_11807	Uncharacterized protein. (2673 aa)
	PTSG_01815	Uncharacterized protein. (2821 aa)
	PTSG_01807	Uncharacterized protein. (2795 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_01973	PTSG_08964	F2TZH8	F2ULT7	Protocadherin gamma B6.	Uncharacterized protein.	0.456
PTSG_05657	PTSG_08964	F2UBU7	F2ULT7	Uncharacterized protein.	Uncharacterized protein.	0.456
PTSG_06458	PTSG_08964	F2UFV3	F2ULT7	Cadherin.	Uncharacterized protein.	0.456
PTSG_07016	PTSG_08964	F2UDT3	F2ULT7	Uncharacterized protein.	Uncharacterized protein.	0.456
PTSG_08442	PTSG_08964	F2UJP7	F2ULT7	PRCDH1 protein.	Uncharacterized protein.	0.456
PTSG_08964	PTSG_01973	F2ULT7	F2TZH8	Uncharacterized protein.	Protocadherin gamma B6.	0.456
PTSG_08964	PTSG_05657	F2ULT7	F2UBU7	Uncharacterized protein.	Uncharacterized protein.	0.456
PTSG_08964	PTSG_06458	F2ULT7	F2UFV3	Uncharacterized protein.	Cadherin.	0.456
PTSG_08964	PTSG_07016	F2ULT7	F2UDT3	Uncharacterized protein.	Uncharacterized protein.	0.456
PTSG_08964	PTSG_08442	F2ULT7	F2UJP7	Uncharacterized protein.	PRCDH1 protein.	0.456

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