(73 nodes) Toll/interleukin-1 receptor homology (TIR) domain superfamily network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_10079	Uncharacterized protein. (795 aa)
	PTSG_13047	Uncharacterized protein. (738 aa)
	PTSG_10661	Uncharacterized protein. (1538 aa)
	PTSG_10731	Uncharacterized protein. (481 aa)
	PTSG_10764	Uncharacterized protein. (523 aa)
	PTSG_10776	Uncharacterized protein. (545 aa)
	PTSG_10286	TIR domain-containing protein. (552 aa)
	PTSG_13103	Uncharacterized protein. (1445 aa)
	PTSG_10524	Uncharacterized protein. (1384 aa)
	PTSG_10616	Uncharacterized protein. (736 aa)
	PTSG_10643	TIR domain-containing protein. (1879 aa)
	PTSG_11050	Uncharacterized protein. (1515 aa)
	PTSG_13127	Peptidase_M22 domain-containing protein. (1383 aa)
	PTSG_11207	Uncharacterized protein. (1485 aa)
	PTSG_13152	Uncharacterized protein. (1473 aa)
	PTSG_11220	Uncharacterized protein. (595 aa)
	PTSG_11226	Uncharacterized protein. (765 aa)
	PTSG_13160	Uncharacterized protein. (1245 aa)
	PTSG_11382	Uncharacterized protein. (1301 aa)
	PTSG_11392	Uncharacterized protein. (338 aa)
	PTSG_00717	TIR domain-containing protein. (644 aa)
	PTSG_00815	Rab2a protein. (1630 aa)
	PTSG_01646	TK protein kinase. (887 aa)
	PTSG_01754	GTP-binding protein. (1337 aa)
	PTSG_02868	Uncharacterized protein. (612 aa)
	PTSG_02981	Uncharacterized protein. (1435 aa)
	PTSG_03021	TIR domain-containing protein. (420 aa)
	PTSG_11802	TIR domain-containing protein. (904 aa)
	PTSG_11812	TIR domain-containing protein. (337 aa)
	PTSG_03500	Uncharacterized protein. (1513 aa)
	PTSG_12139	Uncharacterized protein. (1446 aa)
	PTSG_04323	Uncharacterized protein. (1558 aa)
	PTSG_04341	GTPase. (1557 aa)
	PTSG_12222	Uncharacterized protein. (3075 aa)
	PTSG_05022	Uncharacterized protein. (603 aa)
	PTSG_04721	Uncharacterized protein. (596 aa)
	PTSG_05259	SAM domain-containing protein. (581 aa)
	PTSG_05359	SH2 domain-containing protein. (597 aa)
	PTSG_05418	Uncharacterized protein. (1690 aa)
	PTSG_12317	Uncharacterized protein. (1425 aa)
	PTSG_12359	Uncharacterized protein. (1352 aa)
	PTSG_06287	SECA_MOTOR_DEAD domain-containing protein. (1800 aa)
	PTSG_05955	WD_REPEATS_REGION domain-containing protein. (2245 aa)
	PTSG_07010	TIR domain-containing protein. (1128 aa)
	PTSG_06613	EGF-like domain-containing protein. (1199 aa)
	PTSG_06522	Uncharacterized protein. (389 aa)
	PTSG_12661	TKL protein kinase. (1696 aa)
	PTSG_07523	Uncharacterized protein. (1734 aa)
	PTSG_08524	Uncharacterized protein. (1420 aa)
	PTSG_08560	COR domain-containing protein. (686 aa)
	PTSG_11700	Uncharacterized protein. (1594 aa)
	PTSG_11865	Uncharacterized protein. (1335 aa)
	PTSG_02515	TIR domain-containing protein. (1968 aa)
	PTSG_03080	SH2 domain-containing protein. (860 aa)
	PTSG_08656	TKL/DICTY4 protein kinase. (916 aa)
	PTSG_03350	Uncharacterized protein. (1361 aa)
	PTSG_03428	ANK_REP_REGION domain-containing protein. (1039 aa)
	PTSG_02597	SH2 domain-containing protein. (728 aa)
	PTSG_11903	Roc domain-containing protein. (1728 aa)
	PTSG_00055	TIR domain-containing protein. (791 aa)
	PTSG_11612	Roc domain-containing protein. (1979 aa)
	PTSG_00676	Roc domain-containing protein. (1424 aa)
	PTSG_08722	ANK_REP_REGION domain-containing protein. (1426 aa)
	PTSG_08757	Uncharacterized protein. (1284 aa)
	PTSG_12898	COR domain-containing protein. (1415 aa)
	PTSG_08933	Uncharacterized protein. (1420 aa)
	PTSG_12838	Uncharacterized protein. (1348 aa)
	PTSG_12865	Uncharacterized protein. (1444 aa)
	PTSG_09103	Uncharacterized protein. (700 aa)
	PTSG_09165	Roc domain-containing protein. (1276 aa)
	PTSG_09915	DUF4062 domain-containing protein. (410 aa)
	PTSG_09991	COR domain-containing protein. (900 aa)
	PTSG_10437	Uncharacterized protein. (1345 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00055	PTSG_09165	F2TVE2	F2UMX1	TIR domain-containing protein.	Roc domain-containing protein.	0.491
PTSG_00055	PTSG_10437	F2TVE2	F2UPN6	TIR domain-containing protein.	Uncharacterized protein.	0.491
PTSG_00055	PTSG_11382	F2TVE2	F2UT82	TIR domain-containing protein.	Uncharacterized protein.	0.491
PTSG_00717	PTSG_09165	F2TXA0	F2UMX1	TIR domain-containing protein.	Roc domain-containing protein.	0.491
PTSG_00717	PTSG_10437	F2TXA0	F2UPN6	TIR domain-containing protein.	Uncharacterized protein.	0.491
PTSG_00717	PTSG_11382	F2TXA0	F2UT82	TIR domain-containing protein.	Uncharacterized protein.	0.491
PTSG_00815	PTSG_09165	F2TXK0	F2UMX1	Rab2a protein.	Roc domain-containing protein.	0.716
PTSG_00815	PTSG_10437	F2TXK0	F2UPN6	Rab2a protein.	Uncharacterized protein.	0.716
PTSG_00815	PTSG_11382	F2TXK0	F2UT82	Rab2a protein.	Uncharacterized protein.	0.716
PTSG_01646	PTSG_09165	F2TYJ2	F2UMX1	TK protein kinase.	Roc domain-containing protein.	0.598
PTSG_01646	PTSG_10437	F2TYJ2	F2UPN6	TK protein kinase.	Uncharacterized protein.	0.598
PTSG_01646	PTSG_11382	F2TYJ2	F2UT82	TK protein kinase.	Uncharacterized protein.	0.598
PTSG_01754	PTSG_09165	F2TYV3	F2UMX1	GTP-binding protein.	Roc domain-containing protein.	0.504
PTSG_01754	PTSG_10437	F2TYV3	F2UPN6	GTP-binding protein.	Uncharacterized protein.	0.504
PTSG_01754	PTSG_11382	F2TYV3	F2UT82	GTP-binding protein.	Uncharacterized protein.	0.504
PTSG_02981	PTSG_09165	F2U3X0	F2UMX1	Uncharacterized protein.	Roc domain-containing protein.	0.415
PTSG_02981	PTSG_10437	F2U3X0	F2UPN6	Uncharacterized protein.	Uncharacterized protein.	0.415
PTSG_02981	PTSG_11382	F2U3X0	F2UT82	Uncharacterized protein.	Uncharacterized protein.	0.415
PTSG_03350	PTSG_09165	F2U4X3	F2UMX1	Uncharacterized protein.	Roc domain-containing protein.	0.415
PTSG_03350	PTSG_10437	F2U4X3	F2UPN6	Uncharacterized protein.	Uncharacterized protein.	0.415

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