(35 nodes) CH domain superfamily network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_06248	Uncharacterized protein. (1587 aa)
	PTSG_05588	Calponin-homology (CH) domain-containing protein. (114 aa)
	PTSG_05526	Uncharacterized protein. (995 aa)
	PTSG_05487	Uncharacterized protein. (302 aa)
	PTSG_05371	Calponin-homology (CH) domain-containing protein. (180 aa)
	PTSG_12249	Uncharacterized protein. (1246 aa)
	PTSG_04145	Uncharacterized protein. (417 aa)
	PTSG_04078	Uncharacterized protein. (1656 aa)
	PTSG_03130	Alpha-actinin 4. (2502 aa)
	PTSG_00372	Uncharacterized protein. (1659 aa)
	PTSG_00515	L-plastin. (629 aa)
	PTSG_01042	Uncharacterized protein. (2601 aa)
	PTSG_01712	Uncharacterized protein. (731 aa)
	PTSG_01737	Actinin. (540 aa)
	PTSG_01822	Uncharacterized protein. (1300 aa)
	PTSG_11799	Uncharacterized protein. (1436 aa)
	PTSG_02025	Sporangia induced sperm flagellar protein. (223 aa)
	PTSG_10624	Uncharacterized protein. (745 aa)
	PTSG_10495	Uncharacterized protein. (287 aa)
	PTSG_13048	Calponin-homology (CH) domain-containing protein. (1971 aa)
	PTSG_09965	Calponin-homology (CH) domain-containing protein. (283 aa)
	PTSG_08956	Calponin-homology (CH) domain-containing protein. (2313 aa)
	PTSG_09545	SPTBN1 protein. (3940 aa)
	PTSG_08483	Uncharacterized protein. (1760 aa)
	PTSG_07456	Uncharacterized protein. (377 aa)
	PTSG_05383	TK protein kinase. (503 aa)
	PTSG_05390	Uncharacterized protein. (1149 aa)
	PTSG_05404	Uncharacterized protein. (1112 aa)
	PTSG_05246	Uncharacterized protein. (1010 aa)
	PTSG_07455	Uncharacterized protein. (473 aa)
	PTSG_07388	Uncharacterized protein. (1670 aa)
	PTSG_07383	SH2 domain-containing protein. (380 aa)
	PTSG_08171	Paramyosin. (2384 aa)
	PTSG_06288	Uncharacterized protein. (808 aa)
	PTSG_06223	Uncharacterized protein. (1803 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00515	PTSG_05404	F2TWP3	F2UAC1	L-plastin.	Uncharacterized protein.	0.629
PTSG_00515	PTSG_05487	F2TWP3	F2UBC8	L-plastin.	Uncharacterized protein.	0.629
PTSG_00515	PTSG_05588	F2TWP3	F2UBM7	L-plastin.	Calponin-homology (CH) domain-containing protein.	0.690
PTSG_02025	PTSG_05371	F2TZN2	F2UA84	Sporangia induced sperm flagellar protein.	Calponin-homology (CH) domain-containing protein.	0.416
PTSG_02025	PTSG_08956	F2TZN2	F2ULS9	Sporangia induced sperm flagellar protein.	Calponin-homology (CH) domain-containing protein.	0.494
PTSG_04145	PTSG_05588	F2U6Q8	F2UBM7	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.512
PTSG_04145	PTSG_09965	F2U6Q8	F2UNN8	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.511
PTSG_05371	PTSG_02025	F2UA84	F2TZN2	Calponin-homology (CH) domain-containing protein.	Sporangia induced sperm flagellar protein.	0.416
PTSG_05404	PTSG_00515	F2UAC1	F2TWP3	Uncharacterized protein.	L-plastin.	0.629
PTSG_05487	PTSG_00515	F2UBC8	F2TWP3	Uncharacterized protein.	L-plastin.	0.629
PTSG_05487	PTSG_07456	F2UBC8	F2UIS3	Uncharacterized protein.	Uncharacterized protein.	0.502
PTSG_05588	PTSG_00515	F2UBM7	F2TWP3	Calponin-homology (CH) domain-containing protein.	L-plastin.	0.690
PTSG_05588	PTSG_04145	F2UBM7	F2U6Q8	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.512
PTSG_05588	PTSG_07455	F2UBM7	F2UIS2	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.523
PTSG_05588	PTSG_07456	F2UBM7	F2UIS3	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.532
PTSG_07455	PTSG_05588	F2UIS2	F2UBM7	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.523
PTSG_07455	PTSG_09965	F2UIS2	F2UNN8	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.568
PTSG_07456	PTSG_05487	F2UIS3	F2UBC8	Uncharacterized protein.	Uncharacterized protein.	0.502
PTSG_07456	PTSG_05588	F2UIS3	F2UBM7	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.532
PTSG_07456	PTSG_09965	F2UIS3	F2UNN8	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.518

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