(23 nodes) Lysine degradation network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00122	PLOD2 protein. (527 aa)
	PTSG_00686	Saccharopine dehydrogenase. (373 aa)
	PTSG_00811	Uncharacterized protein. (899 aa)
	PTSG_01787	Uncharacterized protein. (511 aa)
	PTSG_01403	Uncharacterized protein. (431 aa)
	PTSG_02619	Glutaryl-CoA dehydrogenase. (420 aa)
	PTSG_03836	Crotonase; Belongs to the enoyl-CoA hydratase/isomerase family. (287 aa)
	PTSG_04178	Uncharacterized protein. (1398 aa)
	PTSG_04671	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (1131 aa)
	PTSG_04361	Uncharacterized protein. (464 aa)
	PTSG_12284	Uncharacterized protein. (325 aa)
	PTSG_05426	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (560 aa)
	PTSG_07214	Trifunctional enzyme subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (751 aa)
	PTSG_07237	APH domain-containing protein. (362 aa)
	PTSG_07559	Mixed-lineage leukemia protein. (2027 aa)
	PTSG_07579	Aldehyde dehydrogenase 7 family; Belongs to the aldehyde dehydrogenase family. (537 aa)
	PTSG_07353	Acetyl-Coenzyme A acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (415 aa)
	PTSG_08382	Dihydrolipoyl dehydrogenase. (506 aa)
	PTSG_09637	SET domain-containing protein. (967 aa)
	PTSG_09009	Aminotran_1_2 domain-containing protein. (308 aa)
	PTSG_09393	SET domain-containing protein. (367 aa)
	PTSG_12968	Dihydrolipoamide S-succinyltransferase. (442 aa)
	PTSG_11163	Retinaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (885 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00122	PTSG_01403	F2TVL0	F2U089	PLOD2 protein.	Uncharacterized protein.	0.905
PTSG_00122	PTSG_04178	F2TVL0	F2U6U0	PLOD2 protein.	Uncharacterized protein.	0.904
PTSG_00122	PTSG_04361	F2TVL0	F2U8B8	PLOD2 protein.	Uncharacterized protein.	0.905
PTSG_00122	PTSG_04671	F2TVL0	F2U834	PLOD2 protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.900
PTSG_00122	PTSG_07559	F2TVL0	F2UH41	PLOD2 protein.	Mixed-lineage leukemia protein.	0.900
PTSG_00122	PTSG_09393	F2TVL0	F2UMH8	PLOD2 protein.	SET domain-containing protein.	0.904
PTSG_00122	PTSG_12284	F2TVL0	F2U9X9	PLOD2 protein.	Uncharacterized protein.	0.900
PTSG_00686	PTSG_00811	F2TX69	F2TXJ6	Saccharopine dehydrogenase.	Uncharacterized protein.	0.969
PTSG_00686	PTSG_07579	F2TX69	F2UH62	Saccharopine dehydrogenase.	Aldehyde dehydrogenase 7 family; Belongs to the aldehyde dehydrogenase family.	0.422
PTSG_00811	PTSG_00686	F2TXJ6	F2TX69	Uncharacterized protein.	Saccharopine dehydrogenase.	0.969
PTSG_00811	PTSG_07579	F2TXJ6	F2UH62	Uncharacterized protein.	Aldehyde dehydrogenase 7 family; Belongs to the aldehyde dehydrogenase family.	0.940
PTSG_01403	PTSG_00122	F2U089	F2TVL0	Uncharacterized protein.	PLOD2 protein.	0.905
PTSG_01403	PTSG_04178	F2U089	F2U6U0	Uncharacterized protein.	Uncharacterized protein.	0.912
PTSG_01403	PTSG_04361	F2U089	F2U8B8	Uncharacterized protein.	Uncharacterized protein.	0.900
PTSG_01403	PTSG_04671	F2U089	F2U834	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.931
PTSG_01403	PTSG_07559	F2U089	F2UH41	Uncharacterized protein.	Mixed-lineage leukemia protein.	0.927
PTSG_01403	PTSG_09393	F2U089	F2UMH8	Uncharacterized protein.	SET domain-containing protein.	0.908
PTSG_01403	PTSG_09637	F2U089	F2ULK0	Uncharacterized protein.	SET domain-containing protein.	0.913
PTSG_01403	PTSG_12284	F2U089	F2U9X9	Uncharacterized protein.	Uncharacterized protein.	0.902
PTSG_02619	PTSG_03836	F2U2T9	F2U5J0	Glutaryl-CoA dehydrogenase.	Crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.972

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