(25 nodes) RNA polymerase network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00413	DNA-directed RNA polymerase I. (115 aa)
	PTSG_00566	S1 motif domain-containing protein. (171 aa)
	PTSG_11665	Uncharacterized protein. (320 aa)
	PTSG_01026	Uncharacterized protein. (207 aa)
	PTSG_01958	DNA-directed RNA polymerase II subunit RPB3. (271 aa)
	PTSG_01222	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (140 aa)
	PTSG_02173	DNA-directed RNA polymerase II subunit J. (202 aa)
	PTSG_02289	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1193 aa)
	PTSG_02879	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	PTSG_03049	HTH_9 domain-containing protein. (327 aa)
	PTSG_03877	Uncharacterized protein. (424 aa)
	PTSG_12033	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1034 aa)
	PTSG_03718	Uncharacterized protein. (186 aa)
	PTSG_05411	Uncharacterized protein. (203 aa)
	PTSG_06134	RNA polymerase subunit I. (328 aa)
	PTSG_06010	Uncharacterized protein. (58 aa)
	PTSG_07810	Polymerase II polypeptide E. (201 aa)
	PTSG_07660	Uncharacterized protein. (388 aa)
	PTSG_07432	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1834 aa)
	PTSG_08844	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (116 aa)
	PTSG_09519	RNA_pol_L_2 domain-containing protein. (164 aa)
	PTSG_10432	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (222 aa)
	PTSG_10802	RPOL4c domain-containing protein. (153 aa)
	PTSG_11023	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1377 aa)
	PTSG_11312	DNA-directed RNA polymerase I. (69 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00413	PTSG_00566	F2TWE7	F2TWU7	DNA-directed RNA polymerase I.	S1 motif domain-containing protein.	0.999
PTSG_00413	PTSG_01026	F2TWE7	F2TY65	DNA-directed RNA polymerase I.	Uncharacterized protein.	0.985
PTSG_00413	PTSG_01222	F2TWE7	F2U160	DNA-directed RNA polymerase I.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PTSG_00413	PTSG_01958	F2TWE7	F2TZG3	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase II subunit RPB3.	0.999
PTSG_00413	PTSG_02173	F2TWE7	F2U1F2	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase II subunit J.	0.999
PTSG_00413	PTSG_02289	F2TWE7	F2U1S2	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PTSG_00413	PTSG_02879	F2TWE7	F2U3L2	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
PTSG_00413	PTSG_03049	F2TWE7	F2U440	DNA-directed RNA polymerase I.	HTH_9 domain-containing protein.	0.993
PTSG_00413	PTSG_03877	F2TWE7	F2U5N0	DNA-directed RNA polymerase I.	Uncharacterized protein.	0.997
PTSG_00413	PTSG_05411	F2TWE7	F2UAC9	DNA-directed RNA polymerase I.	Uncharacterized protein.	0.998
PTSG_00413	PTSG_06010	F2TWE7	F2UDF0	DNA-directed RNA polymerase I.	Uncharacterized protein.	0.999
PTSG_00413	PTSG_06134	F2TWE7	F2UC17	DNA-directed RNA polymerase I.	RNA polymerase subunit I.	0.999
PTSG_00413	PTSG_07432	F2TWE7	F2UIP5	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.960
PTSG_00413	PTSG_07660	F2TWE7	F2UHE6	DNA-directed RNA polymerase I.	Uncharacterized protein.	0.987
PTSG_00413	PTSG_07810	F2TWE7	F2UGE2	DNA-directed RNA polymerase I.	Polymerase II polypeptide E.	0.985
PTSG_00413	PTSG_08844	F2TWE7	F2UKV6	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PTSG_00413	PTSG_09519	F2TWE7	F2UL86	DNA-directed RNA polymerase I.	RNA_pol_L_2 domain-containing protein.	0.999
PTSG_00413	PTSG_10432	F2TWE7	F2UPM8	DNA-directed RNA polymerase I.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
PTSG_00413	PTSG_10802	F2TWE7	F2UPY9	DNA-directed RNA polymerase I.	RPOL4c domain-containing protein.	0.999
PTSG_00413	PTSG_11023	F2TWE7	F2USG9	DNA-directed RNA polymerase I.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966

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