(27 nodes) Basal transcription factors network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00096	TAFII55_N domain-containing protein. (444 aa)
	PTSG_00325	TAF domain-containing protein. (583 aa)
	PTSG_00702	DUF3591 domain-containing protein. (1814 aa)
	PTSG_01625	Uncharacterized protein. (84 aa)
	PTSG_01653	General transcription factor IIH subunit. (394 aa)
	PTSG_02149	RING-type domain-containing protein. (259 aa)
	PTSG_02335	Uncharacterized protein. (102 aa)
	PTSG_03178	Uncharacterized protein. (804 aa)
	PTSG_03320	Uncharacterized protein. (330 aa)
	PTSG_03418	Uncharacterized protein. (206 aa)
	PTSG_03422	Uncharacterized protein. (311 aa)
	PTSG_03455	Uncharacterized protein. (113 aa)
	PTSG_03502	Uncharacterized protein. (723 aa)
	PTSG_05258	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (249 aa)
	PTSG_05216	TFIIB-type domain-containing protein. (370 aa)
	PTSG_06395	Uncharacterized protein. (621 aa)
	PTSG_12522	TFIIH basal transcription factor complex helicase XPD subunit. (523 aa)
	PTSG_07055	Uncharacterized protein. (695 aa)
	PTSG_12497	HTH TFE/IIEalpha-type domain-containing protein. (486 aa)
	PTSG_06879	Uncharacterized protein. (495 aa)
	PTSG_06576	Uncharacterized protein. (251 aa)
	PTSG_08007	TATA box binding protein. (166 aa)
	PTSG_08683	Uncharacterized protein. (185 aa)
	PTSG_12771	TATA-box-binding protein. (271 aa)
	PTSG_10815	TAFII28 domain-containing protein. (319 aa)
	PTSG_10371	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (372 aa)
	PTSG_11329	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (545 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00096	PTSG_00325	F2TVI3	F2TW61	TAFII55_N domain-containing protein.	TAF domain-containing protein.	0.999
PTSG_00096	PTSG_00702	F2TVI3	F2TX86	TAFII55_N domain-containing protein.	DUF3591 domain-containing protein.	0.999
PTSG_00096	PTSG_01653	F2TVI3	F2TYK0	TAFII55_N domain-containing protein.	General transcription factor IIH subunit.	0.739
PTSG_00096	PTSG_02149	F2TVI3	F2U1C6	TAFII55_N domain-containing protein.	RING-type domain-containing protein.	0.787
PTSG_00096	PTSG_02335	F2TVI3	F2U1W6	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.791
PTSG_00096	PTSG_03178	F2TVI3	F2U4G2	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.790
PTSG_00096	PTSG_03320	F2TVI3	F2U4U6	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.991
PTSG_00096	PTSG_03418	F2TVI3	F2U552	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.999
PTSG_00096	PTSG_03422	F2TVI3	F2U556	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.787
PTSG_00096	PTSG_03455	F2TVI3	F2U590	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.999
PTSG_00096	PTSG_03502	F2TVI3	F2U5T0	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.933
PTSG_00096	PTSG_05216	F2TVI3	F2UAU6	TAFII55_N domain-containing protein.	TFIIB-type domain-containing protein.	0.905
PTSG_00096	PTSG_05258	F2TVI3	F2U9X6	TAFII55_N domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.863
PTSG_00096	PTSG_06395	F2TVI3	F2UCS7	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.787
PTSG_00096	PTSG_06576	F2TVI3	F2UG76	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.881
PTSG_00096	PTSG_07055	F2TVI3	F2UDX2	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.999
PTSG_00096	PTSG_08007	F2TVI3	F2UHQ8	TAFII55_N domain-containing protein.	TATA box binding protein.	0.898
PTSG_00096	PTSG_08683	F2TVI3	F2UKD7	TAFII55_N domain-containing protein.	Uncharacterized protein.	0.898
PTSG_00096	PTSG_10371	F2TVI3	F2UR43	TAFII55_N domain-containing protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.714
PTSG_00096	PTSG_10815	F2TVI3	F2UQ02	TAFII55_N domain-containing protein.	TAFII28 domain-containing protein.	0.995

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