(13 nodes) SNARE interactions in vesicular transport network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	PTSG_00192	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	PTSG_00285	t-SNARE coiled-coil homology domain-containing protein. (106 aa)
	PTSG_00877	V-SNARE coiled-coil homology domain-containing protein. (96 aa)
	PTSG_03305	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (301 aa)
	PTSG_03875	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	PTSG_03656	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (345 aa)
	PTSG_04161	t-SNARE coiled-coil homology domain-containing protein. (128 aa)
	PTSG_12177	Uncharacterized protein. (218 aa)
	PTSG_05416	t-SNARE coiled-coil homology domain-containing protein. (214 aa)
	PTSG_12511	Uncharacterized protein; Belongs to the synaptobrevin family. (241 aa)
	PTSG_07526	SynN domain-containing protein. (216 aa)
	PTSG_07505	t-SNARE coiled-coil homology domain-containing protein. (173 aa)
	PTSG_11105	V-SNARE coiled-coil homology domain-containing protein. (145 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00192	PTSG_00285	F2TVS4	F2TW19	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.671
PTSG_00192	PTSG_00877	F2TVS4	F2TXR2	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.848
PTSG_00192	PTSG_03305	F2TVS4	F2U4T1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.995
PTSG_00192	PTSG_03656	F2TVS4	F2U679	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.997
PTSG_00192	PTSG_03875	F2TVS4	F2U5M8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.987
PTSG_00192	PTSG_04161	F2TVS4	F2U6S4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.966
PTSG_00192	PTSG_05416	F2TVS4	F2UAD4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.909
PTSG_00192	PTSG_07526	F2TVS4	F2UH08	t-SNARE coiled-coil homology domain-containing protein.	SynN domain-containing protein.	0.512
PTSG_00192	PTSG_11105	F2TVS4	F2US56	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.999
PTSG_00192	PTSG_12177	F2TVS4	F2U8L7	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.671
PTSG_00192	PTSG_12511	F2TVS4	F2UF85	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.550
PTSG_00285	PTSG_00192	F2TW19	F2TVS4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.671
PTSG_00285	PTSG_00877	F2TW19	F2TXR2	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.693
PTSG_00285	PTSG_03305	F2TW19	F2U4T1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.999
PTSG_00285	PTSG_03656	F2TW19	F2U679	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.574
PTSG_00285	PTSG_03875	F2TW19	F2U5M8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.999
PTSG_00285	PTSG_04161	F2TW19	F2U6S4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.546
PTSG_00285	PTSG_05416	F2TW19	F2UAD4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.558
PTSG_00285	PTSG_07505	F2TW19	F2UIX3	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.666
PTSG_00285	PTSG_07526	F2TW19	F2UH08	t-SNARE coiled-coil homology domain-containing protein.	SynN domain-containing protein.	0.703

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