91 items (Besnoitia besnoiti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BESB_064480	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (612 aa)
	BESB_073440	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
	BESB_065900	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (5342 aa)
	BESB_044260	Uncharacterized protein. (2423 aa)
	BESB_067030	Ubiquitinyl hydrolase 1. (1131 aa)
	BESB_053120	ASCH domain-containing protein. (1180 aa)
	BESB_058940	Putative splicing factor 3A subunit 2. (213 aa)
	BESB_060100	Sec23/Sec24 trunk domain-containing protein. (1560 aa)
	BESB_039230	Zinc knuckle domain-containing protein. (453 aa)
	BESB_059370	Hydrolase CocE/NonD family protein. (1689 aa)
	BESB_040470	ZPR1 zinc finger domain-containing protein. (572 aa)
	BESB_056020	AN1 family Zinc finger domain-containing protein. (220 aa)
	BESB_060390	Putative bud site selection protein. (102 aa)
	BESB_010820	RING-type domain-containing protein. (1255 aa)
	BESB_062170	Putative aminopeptidase N. (1494 aa)
	BESB_053240	AAA_12 domain-containing protein. (1900 aa)
	BESB_063690	Aspartyl aminopeptidase; Belongs to the peptidase M18 family. (491 aa)
	BESB_004600	Uncharacterized protein. (474 aa)
	BESB_040120	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (1024 aa)
	BESB_009070	Uncharacterized protein. (560 aa)
	BESB_001660	Uncharacterized protein. (2632 aa)
	BESB_010110	Lactamase_B domain-containing protein. (657 aa)
	BESB_045850	Uncharacterized protein. (1465 aa)
	BESB_043840	CHORD protein. (207 aa)
	BESB_046040	Uncharacterized protein. (97 aa)
	BESB_046920	Uncharacterized protein. (1542 aa)
	BESB_038790	DNA-directed RNA polymerase II RPB10. (72 aa)
	BESB_047820	FHA domain-containing protein. (1175 aa)
	BESB_039590	Uncharacterized protein. (1154 aa)
	BESB_037840	Zinc carboxypeptidase superfamily protein. (1197 aa)
	BESB_033700	U1-type domain-containing protein. (472 aa)
	BESB_003320	Uncharacterized protein; Belongs to the mannose-6-phosphate isomerase type 1 family. (664 aa)
	BESB_003570	DNA-directed RNA polymerase I RPA12. (308 aa)
	BESB_005170	Putative translation initiation factor IF-2. (111 aa)
	BESB_005240	Pex14_N domain-containing protein. (1414 aa)
	BESB_003210	Carbonate dehydratase, eukaryotic-type domain-containing protein. (770 aa)
	BESB_005540	Pex2_Pex12 domain-containing protein. (739 aa)
	BESB_009080	BRAP2 domain-containing protein. (585 aa)
	BESB_006380	Uncharacterized protein. (227 aa)
	BESB_005010	Zinc finger, C3HC4 type (RING finger) domain-containing protein. (833 aa)
	BESB_006810	CCHC-type domain-containing protein. (825 aa)
	BESB_010720	CHY zinc finger domain-containing protein. (555 aa)
	BESB_017840	SP-RING-type domain-containing protein. (360 aa)
	BESB_065880	Metallo-beta-lactamase domain-containing protein. (931 aa)
	BESB_021240	Endonuclease IV APN. (448 aa)
	BESB_013130	Putative GTP cyclohydrolase I. (561 aa)
	BESB_015840	DnaJ domain-containing protein. (798 aa)
	BESB_019140	RNA helicase (UPF2 interacting domain) protein. (1448 aa)
	BESB_072770	Uncharacterized protein. (3157 aa)
	BESB_025810	Putative ubiquitin specific protease 39 isoform 2. (587 aa)
	BESB_086320	Putative RNA polymerase C2. (608 aa)
	BESB_016720	AAA family protein. (1686 aa)
	BESB_018340	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (237 aa)
	BESB_066480	DNA-directed RNA polymerase II RPB9. (263 aa)
	BESB_066320	FHA domain-containing protein. (1083 aa)
	BESB_020510	Uncharacterized protein. (3414 aa)
	BESB_015390	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2742 aa)
	BESB_013020	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (686 aa)
	BESB_013540	Zinc finger protein. (597 aa)
	BESB_082460	Cytidine and deoxycytidylate deaminase zinc-binding region domain-containing protein. (443 aa)
	BESB_062160	Putative aminopeptidase n. (991 aa)
	BESB_015350	Zinc knuckle domain-containing protein. (211 aa)
	BESB_043400	Lactamase_B domain-containing protein. (1337 aa)
	BESB_084860	Transcription elongation factor SPT4. (148 aa)
	BESB_085390	DNL zinc finger protein. (280 aa)
	BESB_080190	Subtilisin SUB12; Belongs to the peptidase S8 family. (1995 aa)
	BESB_027260	Putative transport protein Sec24. (997 aa)
	BESB_015420	MIZ/SP-RING zinc finger domain-containing protein. (1256 aa)
	BESB_021050	DUF866 domain-containing protein. (159 aa)
	BESB_030750	Peptidase_M14 domain-containing protein. (1988 aa)
	BESB_083870	Homocysteine s-methyltransferase domain-containing protein. (415 aa)
	BESB_011870	B-box zinc finger domain-containing protein. (675 aa)
	BESB_018130	CHY zinc finger protein. (1056 aa)
	BESB_026280	General transcription factor IIH polypeptide 2 GTF2H2. (516 aa)
	BESB_026080	RING-type domain-containing protein. (1050 aa)
	BESB_086330	Uncharacterized protein. (476 aa)
	BESB_021260	Radical SAM domain-containing protein. (776 aa)
	BESB_026690	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (4926 aa)
	BESB_029300	UBP-type domain-containing protein. (2732 aa)
	BESB_028240	Putative adenylosuccinate lyase. (666 aa)
	BESB_019190	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (797 aa)
	BESB_027630	MIZ/SP-RING zinc finger domain-containing protein. (1823 aa)
	BESB_031320	Uncharacterized protein. (2177 aa)
	BESB_073080	Zn-containing alcohol dehydrogenase. (397 aa)
	BESB_062910	Alpha-carbonic anhydrase domain-containing protein. (523 aa)
	BESB_044070	DNA polymerase family B protein. (2985 aa)
	BESB_066840	Ring box protein 1 family protein. (127 aa)
	BESB_080060	U1 zinc finger protein. (549 aa)
	BESB_080080	Putative splicesome-associated protein. (555 aa)
	BESB_080660	Aminopeptidase N protein. (1078 aa)
	BESB_054850	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (497 aa)

Your Current Organism:

Besnoitia besnoiti

NCBI taxonomy Id: 94643
Other names: B. besnoiti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BESB_001660	BESB_054850	A0A2A9MKR2	A0A2A9MF53	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.673
BESB_003210	BESB_015390	A0A2A9MPZ3	A0A2A9MAG0	Carbonate dehydratase, eukaryotic-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.408
BESB_003570	BESB_015390	A0A2A9MNZ9	A0A2A9MAG0	DNA-directed RNA polymerase I RPA12.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
BESB_003570	BESB_026280	A0A2A9MNZ9	A0A2A9M357	DNA-directed RNA polymerase I RPA12.	General transcription factor IIH polypeptide 2 GTF2H2.	0.923
BESB_003570	BESB_038790	A0A2A9MNZ9	A0A2A9MM18	DNA-directed RNA polymerase I RPA12.	DNA-directed RNA polymerase II RPB10.	0.999
BESB_003570	BESB_039590	A0A2A9MNZ9	A0A2A9MM79	DNA-directed RNA polymerase I RPA12.	Uncharacterized protein.	0.512
BESB_003570	BESB_060390	A0A2A9MNZ9	A0A2A9MID0	DNA-directed RNA polymerase I RPA12.	Putative bud site selection protein.	0.500
BESB_003570	BESB_066480	A0A2A9MNZ9	A0A2A9M9D3	DNA-directed RNA polymerase I RPA12.	DNA-directed RNA polymerase II RPB9.	0.718
BESB_003570	BESB_066840	A0A2A9MNZ9	A0A2A9MEF4	DNA-directed RNA polymerase I RPA12.	Ring box protein 1 family protein.	0.621
BESB_003570	BESB_073440	A0A2A9MNZ9	A0A2A9MFN3	DNA-directed RNA polymerase I RPA12.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.719
BESB_003570	BESB_084860	A0A2A9MNZ9	A0A2A9MCE9	DNA-directed RNA polymerase I RPA12.	Transcription elongation factor SPT4.	0.917
BESB_003570	BESB_086320	A0A2A9MNZ9	A0A2A9M5A4	DNA-directed RNA polymerase I RPA12.	Putative RNA polymerase C2.	0.798
BESB_003570	BESB_086330	A0A2A9MNZ9	A0A2A9M2R3	DNA-directed RNA polymerase I RPA12.	Uncharacterized protein.	0.798
BESB_005170	BESB_018340	A0A2A9MPB8	A0A2A9M9C8	Putative translation initiation factor IF-2.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.908
BESB_005170	BESB_025810	A0A2A9MPB8	A0A2A9M7I2	Putative translation initiation factor IF-2.	Putative ubiquitin specific protease 39 isoform 2.	0.670
BESB_005170	BESB_033700	A0A2A9MPB8	A0A2A9MMV4	Putative translation initiation factor IF-2.	U1-type domain-containing protein.	0.903
BESB_005170	BESB_058940	A0A2A9MPB8	A0A2A9MHE2	Putative translation initiation factor IF-2.	Putative splicing factor 3A subunit 2.	0.999
BESB_005170	BESB_066480	A0A2A9MPB8	A0A2A9M9D3	Putative translation initiation factor IF-2.	DNA-directed RNA polymerase II RPB9.	0.408
BESB_005170	BESB_080060	A0A2A9MPB8	A0A2A9MEI3	Putative translation initiation factor IF-2.	U1 zinc finger protein.	0.616
BESB_005170	BESB_080080	A0A2A9MPB8	A0A2A9MEI7	Putative translation initiation factor IF-2.	Putative splicesome-associated protein.	0.990