(78 nodes) mRNA surveillance pathway network (Besnoitia besnoiti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BESB_065180	YT521-B family protein. (454 aa)
	BESB_079960	Elongation factor Tu GTP binding domain-containing protein. (650 aa)
	BESB_071550	RNA recognition motif-containing protein. (360 aa)
	BESB_078880	Smg-4/UPF3 family protein. (526 aa)
	BESB_043310	Putative elongation factor Tu. (588 aa)
	BESB_065120	GYF domain-containing protein. (2019 aa)
	BESB_048800	RNA recognition motif-containing protein. (557 aa)
	BESB_062510	CPSF_A domain-containing protein. (3054 aa)
	BESB_056750	Putative eukaryotic peptide chain release factor. (430 aa)
	BESB_064780	WD domain, G-beta repeat-containing protein. (585 aa)
	BESB_044260	Uncharacterized protein. (2423 aa)
	BESB_067300	Nuclear factor NF2. (325 aa)
	BESB_040030	Cleavage and polyadenylation specificity factor subunit 2. (1719 aa)
	BESB_060440	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (668 aa)
	BESB_055720	Putative transcription factor IIB. (191 aa)
	BESB_053240	AAA_12 domain-containing protein. (1900 aa)
	BESB_006700	MIF4G domain-containing protein. (1421 aa)
	BESB_008910	Hsp70 interacting protein HIP. (423 aa)
	BESB_034790	Serine/threonine-protein phosphatase. (558 aa)
	BESB_010810	Fip1 domain-containing protein. (282 aa)
	BESB_050440	Uncharacterized protein. (1246 aa)
	BESB_004020	MIF4G_like_2 domain-containing protein. (1233 aa)
	BESB_005320	Uncharacterized protein. (160 aa)
	BESB_038180	RNA recognition motif-containing protein. (558 aa)
	BESB_002770	Uncharacterized protein. (752 aa)
	BESB_000520	RNA-binding protein. (401 aa)
	BESB_005240	Pex14_N domain-containing protein. (1414 aa)
	BESB_005840	Symplekin_C domain-containing protein. (1867 aa)
	BESB_006440	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (574 aa)
	BESB_006540	Uncharacterized protein. (1816 aa)
	BESB_005830	Uncharacterized protein. (179 aa)
	BESB_008490	RNA-binding protein 8A family protein. (161 aa)
	BESB_006810	CCHC-type domain-containing protein. (825 aa)
	BESB_077670	Putative eukaryotic translation initiation factor 4A, isoform 3; Belongs to the DEAD box helicase family. (395 aa)
	BESB_074330	Uncharacterized protein. (455 aa)
	BESB_080820	Putative mrna cleavage factor family protein. (438 aa)
	BESB_084490	RRM domain-containing protein. (568 aa)
	BESB_082910	Suf domain-containing protein. (1306 aa)
	BESB_012740	RNA recognition motif-containing protein. (1003 aa)
	BESB_053990	EF-hand domain-containing protein. (1341 aa)
	BESB_017600	mRNA capping enzyme. (488 aa)
	BESB_058360	Uncharacterized protein. (1293 aa)
	BESB_059020	Uncharacterized protein. (1534 aa)
	BESB_073060	Mago binding protein. (264 aa)
	BESB_062450	Serine/threonine-protein phosphatase. (348 aa)
	BESB_068480	Cleavage and polyadenylation specifity factor protein. (1008 aa)
	BESB_061850	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (741 aa)
	BESB_024440	Uncharacterized protein. (2893 aa)
	BESB_020380	DNA repair metallo-beta-lactamase. (278 aa)
	BESB_064460	EF-hand domain-containing protein. (1044 aa)
	BESB_074710	Zinc finger (CCCH type) motif-containing protein. (134 aa)
	BESB_019140	RNA helicase (UPF2 interacting domain) protein. (1448 aa)
	BESB_026060	Polynucleotide 5'-hydroxyl-kinase. (761 aa)
	BESB_076110	RNA recognition motif-containing protein. (659 aa)
	BESB_020470	Nuclear cap-binding protein subunit 2. (283 aa)
	BESB_019070	RNA recognition motif-containing protein. (672 aa)
	BESB_016290	RNA recognition motif-containing protein. (284 aa)
	BESB_080950	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (592 aa)
	BESB_080910	HEAT repeat-containing protein. (1698 aa)
	BESB_024890	Uncharacterized protein. (2017 aa)
	BESB_078950	HEAT repeat-containing protein. (776 aa)
	BESB_024330	Uncharacterized protein. (866 aa)
	BESB_072200	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (306 aa)
	BESB_077720	DEAD (Asp-Glu-Ala-Asp) box polypeptide DDX39. (434 aa)
	BESB_076620	WD domain, G-beta repeat-containing protein. (860 aa)
	BESB_032540	Methyltransferase domain-containing protein. (1165 aa)
	BESB_012160	Ser/Thr phosphatase family protein. (424 aa)
	BESB_084640	Putative eukaryotic initiation factor-2A. (714 aa)
	BESB_017820	Metallo-beta-lactamase domain-containing protein. (1187 aa)
	BESB_016720	AAA family protein. (1686 aa)
	BESB_021050	DUF866 domain-containing protein. (159 aa)
	BESB_013610	Sin3-associated polypeptide SAP18. (872 aa)
	BESB_013510	Zinc finger (CCCH type) motif-containing protein. (697 aa)
	BESB_012470	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (397 aa)
	BESB_019300	RNA recognition motif-containing protein. (243 aa)
	BESB_072640	PWI domain-containing protein. (319 aa)
	BESB_071840	Uncharacterized protein. (2679 aa)
	BESB_071020	Mov34/MPN/PAD-1 family protein. (463 aa)

Your Current Organism:

Besnoitia besnoiti

NCBI taxonomy Id: 94643
Other names: B. besnoiti

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BESB_000520	BESB_006540	A0A2A9MPG0	A0A2A9MQ61	RNA-binding protein.	Uncharacterized protein.	0.493
BESB_000520	BESB_013510	A0A2A9MPG0	A0A2A9M462	RNA-binding protein.	Zinc finger (CCCH type) motif-containing protein.	0.944
BESB_000520	BESB_050440	A0A2A9MPG0	A0A2A9MMR4	RNA-binding protein.	Uncharacterized protein.	0.471
BESB_000520	BESB_072640	A0A2A9MPG0	A0A2A9MFE5	RNA-binding protein.	PWI domain-containing protein.	0.616
BESB_000520	BESB_074710	A0A2A9MPG0	A0A2A9M8T7	RNA-binding protein.	Zinc finger (CCCH type) motif-containing protein.	0.493
BESB_000520	BESB_078880	A0A2A9MPG0	A0A2A9ME61	RNA-binding protein.	Smg-4/UPF3 family protein.	0.510
BESB_002770	BESB_004020	A0A2A9MNT9	A0A2A9MNF0	Uncharacterized protein.	MIF4G_like_2 domain-containing protein.	0.702
BESB_002770	BESB_016290	A0A2A9MNT9	A0A2A9M7P0	Uncharacterized protein.	RNA recognition motif-containing protein.	0.546
BESB_002770	BESB_019300	A0A2A9MNT9	A0A2A9M1Z6	Uncharacterized protein.	RNA recognition motif-containing protein.	0.715
BESB_002770	BESB_020470	A0A2A9MNT9	A0A2A9M858	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.707
BESB_002770	BESB_050440	A0A2A9MNT9	A0A2A9MMR4	Uncharacterized protein.	Uncharacterized protein.	0.673
BESB_002770	BESB_077670	A0A2A9MNT9	A0A2A9MDT8	Uncharacterized protein.	Putative eukaryotic translation initiation factor 4A, isoform 3; Belongs to the DEAD box helicase family.	0.741
BESB_002770	BESB_077720	A0A2A9MNT9	A0A2A9M6E9	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide DDX39.	0.610
BESB_002770	BESB_078880	A0A2A9MNT9	A0A2A9ME61	Uncharacterized protein.	Smg-4/UPF3 family protein.	0.597
BESB_002770	BESB_080950	A0A2A9MNT9	A0A2A9M7G2	Uncharacterized protein.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.897
BESB_004020	BESB_002770	A0A2A9MNF0	A0A2A9MNT9	MIF4G_like_2 domain-containing protein.	Uncharacterized protein.	0.702
BESB_004020	BESB_005830	A0A2A9MNF0	A0A2A9MQG1	MIF4G_like_2 domain-containing protein.	Uncharacterized protein.	0.871
BESB_004020	BESB_005840	A0A2A9MNF0	A0A2A9MQ19	MIF4G_like_2 domain-containing protein.	Symplekin_C domain-containing protein.	0.829
BESB_004020	BESB_006540	A0A2A9MNF0	A0A2A9MQ61	MIF4G_like_2 domain-containing protein.	Uncharacterized protein.	0.630
BESB_004020	BESB_006700	A0A2A9MNF0	A0A2A9MK80	MIF4G_like_2 domain-containing protein.	MIF4G domain-containing protein.	0.798