5 items (Ramazzottius varieornatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RvY_05475-1	Uncharacterized protein. (377 aa)
	RvY_08559-1	DNTTIP1_dimer domain-containing protein. (469 aa)
	RvY_09483	Uncharacterized protein. (1239 aa)
	RvY_09483-2	Uncharacterized protein. (1100 aa)
	RvY_10631-1	Uncharacterized protein. (524 aa)

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_05475-1	RvY_09483	A0A1D1UV63	A0A1D1VBP7	Uncharacterized protein.	Uncharacterized protein.	0.443
RvY_05475-1	RvY_09483-2	A0A1D1UV63	A0A1D1VE28	Uncharacterized protein.	Uncharacterized protein.	0.443
RvY_08559-1	RvY_09483	A0A1D1V687	A0A1D1VBP7	DNTTIP1_dimer domain-containing protein.	Uncharacterized protein.	0.703
RvY_08559-1	RvY_09483-2	A0A1D1V687	A0A1D1VE28	DNTTIP1_dimer domain-containing protein.	Uncharacterized protein.	0.703
RvY_08559-1	RvY_10631-1	A0A1D1V687	A0A1D1VFG8	DNTTIP1_dimer domain-containing protein.	Uncharacterized protein.	0.838
RvY_09483	RvY_05475-1	A0A1D1VBP7	A0A1D1UV63	Uncharacterized protein.	Uncharacterized protein.	0.443
RvY_09483	RvY_08559-1	A0A1D1VBP7	A0A1D1V687	Uncharacterized protein.	DNTTIP1_dimer domain-containing protein.	0.703
RvY_09483-2	RvY_05475-1	A0A1D1VE28	A0A1D1UV63	Uncharacterized protein.	Uncharacterized protein.	0.443
RvY_09483-2	RvY_08559-1	A0A1D1VE28	A0A1D1V687	Uncharacterized protein.	DNTTIP1_dimer domain-containing protein.	0.703
RvY_10631-1	RvY_08559-1	A0A1D1VFG8	A0A1D1V687	Uncharacterized protein.	DNTTIP1_dimer domain-containing protein.	0.838