22 items (Ramazzottius varieornatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RvY_11398-1	Uncharacterized protein. (622 aa)
	RvY_11157-1	Uncharacterized protein. (1076 aa)
	RvY_14382	Uncharacterized protein. (775 aa)
	RvY_14382-2	Uncharacterized protein. (774 aa)
	RvY_03013-1	FHA domain-containing protein. (1296 aa)
	RvY_02307-1	Uncharacterized protein. (733 aa)
	RvY_05278-1	SANT domain-containing protein. (365 aa)
	RvY_08059-1	Uncharacterized protein. (1120 aa)
	RvY_08423-1	Uncharacterized protein. (1153 aa)
	RvY_10000-1	Uncharacterized protein. (508 aa)
	RvY_09483	Uncharacterized protein. (1239 aa)
	RvY_09483-2	Uncharacterized protein. (1100 aa)
	RvY_10631-1	Uncharacterized protein. (524 aa)
	RvY_12676-1	Uncharacterized protein. (1282 aa)
	RvY_13730-1	ELM2 domain-containing protein. (400 aa)
	RvY_12912-1	Uncharacterized protein. (776 aa)
	RvY_15907-1	Uncharacterized protein. (853 aa)
	RvY_02226-1	Uncharacterized protein. (643 aa)
	RvY_17530-1	Uncharacterized protein. (3161 aa)
	RvY_17071-1	Uncharacterized protein. (392 aa)
	RvY_17071	Uncharacterized protein. (369 aa)
	RvY_03234-1	Uncharacterized protein. (961 aa)

Your Current Organism:

Ramazzottius varieornatus

NCBI taxonomy Id: 947166
Other names: R. varieornatus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RvY_02307-1	RvY_08059-1	A0A1D1URB9	A0A1D1V4G1	Uncharacterized protein.	Uncharacterized protein.	0.645
RvY_02307-1	RvY_10000-1	A0A1D1URB9	A0A1D1VBB4	Uncharacterized protein.	Uncharacterized protein.	0.561
RvY_02307-1	RvY_11157-1	A0A1D1URB9	A0A1D1VJK5	Uncharacterized protein.	Uncharacterized protein.	0.645
RvY_02307-1	RvY_13730-1	A0A1D1URB9	A0A1D1VSY3	Uncharacterized protein.	ELM2 domain-containing protein.	0.676
RvY_02307-1	RvY_17530-1	A0A1D1URB9	A0A1D1W4K5	Uncharacterized protein.	Uncharacterized protein.	0.636
RvY_03013-1	RvY_08059-1	A0A1D1UQ24	A0A1D1V4G1	FHA domain-containing protein.	Uncharacterized protein.	0.641
RvY_03013-1	RvY_10000-1	A0A1D1UQ24	A0A1D1VBB4	FHA domain-containing protein.	Uncharacterized protein.	0.667
RvY_03013-1	RvY_11157-1	A0A1D1UQ24	A0A1D1VJK5	FHA domain-containing protein.	Uncharacterized protein.	0.641
RvY_03013-1	RvY_17530-1	A0A1D1UQ24	A0A1D1W4K5	FHA domain-containing protein.	Uncharacterized protein.	0.650
RvY_03234-1	RvY_08059-1	A0A1D1UMC6	A0A1D1V4G1	Uncharacterized protein.	Uncharacterized protein.	0.584
RvY_03234-1	RvY_10000-1	A0A1D1UMC6	A0A1D1VBB4	Uncharacterized protein.	Uncharacterized protein.	0.408
RvY_03234-1	RvY_11157-1	A0A1D1UMC6	A0A1D1VJK5	Uncharacterized protein.	Uncharacterized protein.	0.584
RvY_03234-1	RvY_17530-1	A0A1D1UMC6	A0A1D1W4K5	Uncharacterized protein.	Uncharacterized protein.	0.502
RvY_08059-1	RvY_02307-1	A0A1D1V4G1	A0A1D1URB9	Uncharacterized protein.	Uncharacterized protein.	0.645
RvY_08059-1	RvY_03013-1	A0A1D1V4G1	A0A1D1UQ24	Uncharacterized protein.	FHA domain-containing protein.	0.641
RvY_08059-1	RvY_03234-1	A0A1D1V4G1	A0A1D1UMC6	Uncharacterized protein.	Uncharacterized protein.	0.584
RvY_08059-1	RvY_10000-1	A0A1D1V4G1	A0A1D1VBB4	Uncharacterized protein.	Uncharacterized protein.	0.581
RvY_08059-1	RvY_12676-1	A0A1D1V4G1	A0A1D1VSX7	Uncharacterized protein.	Uncharacterized protein.	0.495
RvY_08059-1	RvY_13730-1	A0A1D1V4G1	A0A1D1VSY3	Uncharacterized protein.	ELM2 domain-containing protein.	0.730
RvY_08059-1	RvY_17530-1	A0A1D1V4G1	A0A1D1W4K5	Uncharacterized protein.	Uncharacterized protein.	0.680