STRINGSTRING
ackA ackA OHU18164.1 OHU18164.1 OHU18915.1 OHU18915.1 OHU22246.1 OHU22246.1 OHU22140.1 OHU22140.1 OHU21750.1 OHU21750.1 pta pta OHU21137.1 OHU21137.1 OHU20689.1 OHU20689.1 OHU31108.1 OHU31108.1 OHU31384.1 OHU31384.1 OHU30486.1 OHU30486.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (372 aa)
OHU18164.1Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AlaDH/PNT family. (371 aa)
OHU18915.1Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
OHU22246.1Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
OHU22140.1Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the group II decarboxylase family. (472 aa)
OHU21750.1Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
ptaPhosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (693 aa)
OHU21137.1Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
OHU20689.1Taurine catabolism dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
OHU31108.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (486 aa)
OHU31384.1NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1556 aa)
OHU30486.1Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)
Your Current Organism:
Mycobacteroides franklinii
NCBI taxonomy Id: 948102
Other names: ATCC BAA-2149, DSM 45524, M. franklinii, Mycobacterium franklinii, Mycobacterium franklinii Nogueira et al. 2015, Mycobacterium sp. CV02, Mycobacteroides franklinii (Nogueira et al. 2015) Gupta et al. 2018, strain CV002
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