(11 nodes) RHO GTPases activate KTN1, and Postsynaptic cytoskeleton network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_11761	Kinesin-like KIF16B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1255 aa)
	N309_15015	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (915 aa)
	N309_08151	Kinesin light chain 1. (534 aa)
	N309_07882	Kinesin-like KIF26B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1692 aa)
	N309_04539	Nephrocystin-3. (1260 aa)
	N309_00660	Kinesin-1 heavy chain. (151 aa)
	N309_00661	Kinesin-1 heavy chain. (67 aa)
	N309_15029	Neurofilament heavy polypeptide; Belongs to the intermediate filament family. (644 aa)
	N309_02723	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (635 aa)
	N309_12944	MAPK-interacting and spindle-stabilizing protein-like. (231 aa)
	N309_05095	Neurofilament light polypeptide; Belongs to the intermediate filament family. (156 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00660	N309_02723	A0A099ZIW4	A0A099ZSI8	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.930
N309_00660	N309_04539	A0A099ZIW4	A0A099ZFQ3	Kinesin-1 heavy chain.	Nephrocystin-3.	0.823
N309_00660	N309_05095	A0A099ZIW4	A0A099ZTZ0	Kinesin-1 heavy chain.	Neurofilament light polypeptide; Belongs to the intermediate filament family.	0.628
N309_00660	N309_07882	A0A099ZIW4	A0A099Z634	Kinesin-1 heavy chain.	Kinesin-like KIF26B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.552
N309_00660	N309_08151	A0A099ZIW4	A0A099Z5D1	Kinesin-1 heavy chain.	Kinesin light chain 1.	0.927
N309_00660	N309_12944	A0A099ZIW4	A0A099ZSW1	Kinesin-1 heavy chain.	MAPK-interacting and spindle-stabilizing protein-like.	0.478
N309_00660	N309_15015	A0A099ZIW4	A0A099Z327	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.679
N309_00660	N309_15029	A0A099ZIW4	A0A099ZPJ5	Kinesin-1 heavy chain.	Neurofilament heavy polypeptide; Belongs to the intermediate filament family.	0.552
N309_00661	N309_04539	A0A099ZLF4	A0A099ZFQ3	Kinesin-1 heavy chain.	Nephrocystin-3.	0.823
N309_00661	N309_05095	A0A099ZLF4	A0A099ZTZ0	Kinesin-1 heavy chain.	Neurofilament light polypeptide; Belongs to the intermediate filament family.	0.628
N309_00661	N309_07882	A0A099ZLF4	A0A099Z634	Kinesin-1 heavy chain.	Kinesin-like KIF26B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.552
N309_00661	N309_08151	A0A099ZLF4	A0A099Z5D1	Kinesin-1 heavy chain.	Kinesin light chain 1.	0.927
N309_00661	N309_12944	A0A099ZLF4	A0A099ZSW1	Kinesin-1 heavy chain.	MAPK-interacting and spindle-stabilizing protein-like.	0.478
N309_00661	N309_15015	A0A099ZLF4	A0A099Z327	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.679
N309_00661	N309_15029	A0A099ZLF4	A0A099ZPJ5	Kinesin-1 heavy chain.	Neurofilament heavy polypeptide; Belongs to the intermediate filament family.	0.552
N309_02723	N309_00660	A0A099ZSI8	A0A099ZIW4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-1 heavy chain.	0.930
N309_02723	N309_04539	A0A099ZSI8	A0A099ZFQ3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Nephrocystin-3.	0.823
N309_02723	N309_05095	A0A099ZSI8	A0A099ZTZ0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Neurofilament light polypeptide; Belongs to the intermediate filament family.	0.628
N309_02723	N309_07882	A0A099ZSI8	A0A099Z634	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like KIF26B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.552
N309_02723	N309_08151	A0A099ZSI8	A0A099Z5D1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin light chain 1.	0.927