11 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_01797	WD repeat and SOCS box-containing protein 1. (408 aa)
	N309_14432	Microspherule protein 1. (74 aa)
	N309_12761	Host cell factor 2. (656 aa)
	N309_02196	WD repeat and SOCS box-containing protein 2. (368 aa)
	N309_05636	Tetratricopeptide repeat protein 6. (613 aa)
	N309_14218	PHD finger protein 20. (999 aa)
	N309_13927	Testis-expressed sequence 30 protein. (220 aa)
	N309_04406	KAT8 regulatory NSL complex subunit 1. (658 aa)
	N309_14714	PHD finger protein 13. (258 aa)
	N309_15329	KAT8 regulatory NSL complex subunit 2. (205 aa)
	N309_07366	KAT8 regulatory NSL complex subunit 1-like. (857 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_01797	N309_02196	A0A099YZ91	A0A099Z469	WD repeat and SOCS box-containing protein 1.	WD repeat and SOCS box-containing protein 2.	0.442
N309_01797	N309_04406	A0A099YZ91	A0A099Z7B5	WD repeat and SOCS box-containing protein 1.	KAT8 regulatory NSL complex subunit 1.	0.796
N309_01797	N309_07366	A0A099YZ91	A0A099ZPI9	WD repeat and SOCS box-containing protein 1.	KAT8 regulatory NSL complex subunit 1-like.	0.796
N309_01797	N309_12761	A0A099YZ91	A0A099Z406	WD repeat and SOCS box-containing protein 1.	Host cell factor 2.	0.873
N309_01797	N309_14218	A0A099YZ91	A0A099Z4M9	WD repeat and SOCS box-containing protein 1.	PHD finger protein 20.	0.715
N309_01797	N309_14432	A0A099YZ91	A0A099Z251	WD repeat and SOCS box-containing protein 1.	Microspherule protein 1.	0.776
N309_01797	N309_15329	A0A099YZ91	A0A099ZJH0	WD repeat and SOCS box-containing protein 1.	KAT8 regulatory NSL complex subunit 2.	0.875
N309_02196	N309_01797	A0A099Z469	A0A099YZ91	WD repeat and SOCS box-containing protein 2.	WD repeat and SOCS box-containing protein 1.	0.442
N309_02196	N309_04406	A0A099Z469	A0A099Z7B5	WD repeat and SOCS box-containing protein 2.	KAT8 regulatory NSL complex subunit 1.	0.796
N309_02196	N309_07366	A0A099Z469	A0A099ZPI9	WD repeat and SOCS box-containing protein 2.	KAT8 regulatory NSL complex subunit 1-like.	0.796
N309_02196	N309_12761	A0A099Z469	A0A099Z406	WD repeat and SOCS box-containing protein 2.	Host cell factor 2.	0.873
N309_02196	N309_14218	A0A099Z469	A0A099Z4M9	WD repeat and SOCS box-containing protein 2.	PHD finger protein 20.	0.715
N309_02196	N309_14432	A0A099Z469	A0A099Z251	WD repeat and SOCS box-containing protein 2.	Microspherule protein 1.	0.776
N309_02196	N309_15329	A0A099Z469	A0A099ZJH0	WD repeat and SOCS box-containing protein 2.	KAT8 regulatory NSL complex subunit 2.	0.875
N309_04406	N309_01797	A0A099Z7B5	A0A099YZ91	KAT8 regulatory NSL complex subunit 1.	WD repeat and SOCS box-containing protein 1.	0.796
N309_04406	N309_02196	A0A099Z7B5	A0A099Z469	KAT8 regulatory NSL complex subunit 1.	WD repeat and SOCS box-containing protein 2.	0.796
N309_04406	N309_12761	A0A099Z7B5	A0A099Z406	KAT8 regulatory NSL complex subunit 1.	Host cell factor 2.	0.702
N309_04406	N309_13927	A0A099Z7B5	A0A099Z5A2	KAT8 regulatory NSL complex subunit 1.	Testis-expressed sequence 30 protein.	0.579
N309_04406	N309_14218	A0A099Z7B5	A0A099Z4M9	KAT8 regulatory NSL complex subunit 1.	PHD finger protein 20.	0.930
N309_04406	N309_14432	A0A099Z7B5	A0A099Z251	KAT8 regulatory NSL complex subunit 1.	Microspherule protein 1.	0.907