(12 nodes) Translesion synthesis network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_00642	DNA polymerase delta subunit 2. (250 aa)
	N309_11916	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1254 aa)
	N309_04851	Mitotic spindle assembly checkpoint protein MAD2B. (211 aa)
	N309_09812	Denticleless protein. (710 aa)
	N309_03449	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	N309_01987	DNA polymerase kappa. (868 aa)
	N309_06994	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (811 aa)
	N309_07551	Zinc finger and BTB domain-containing protein 1. (710 aa)
	N309_04239	SprT-like domain-containing protein. (403 aa)
	N309_14691	DNA polymerase epsilon subunit 2. (294 aa)
	N309_00531	DNA polymerase zeta catalytic subunit. (3120 aa)
	N309_08282	Polymerase delta-interacting protein 2. (315 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00531	N309_00642	A0A099ZCG1	A0A099ZHW1	DNA polymerase zeta catalytic subunit.	DNA polymerase delta subunit 2.	0.996
N309_00531	N309_01987	A0A099ZCG1	A0A099Z5T6	DNA polymerase zeta catalytic subunit.	DNA polymerase kappa.	0.960
N309_00531	N309_03449	A0A099ZCG1	A0A099ZQC4	DNA polymerase zeta catalytic subunit.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.989
N309_00531	N309_04239	A0A099ZCG1	A0A099Z8U9	DNA polymerase zeta catalytic subunit.	SprT-like domain-containing protein.	0.540
N309_00531	N309_04851	A0A099ZCG1	A0A099ZR50	DNA polymerase zeta catalytic subunit.	Mitotic spindle assembly checkpoint protein MAD2B.	0.999
N309_00531	N309_09812	A0A099ZCG1	A0A099ZLW9	DNA polymerase zeta catalytic subunit.	Denticleless protein.	0.657
N309_00531	N309_11916	A0A099ZCG1	A0A099ZLL2	DNA polymerase zeta catalytic subunit.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.997
N309_00531	N309_14691	A0A099ZCG1	A0A099Z928	DNA polymerase zeta catalytic subunit.	DNA polymerase epsilon subunit 2.	0.991
N309_00642	N309_00531	A0A099ZHW1	A0A099ZCG1	DNA polymerase delta subunit 2.	DNA polymerase zeta catalytic subunit.	0.996
N309_00642	N309_01987	A0A099ZHW1	A0A099Z5T6	DNA polymerase delta subunit 2.	DNA polymerase kappa.	0.823
N309_00642	N309_03449	A0A099ZHW1	A0A099ZQC4	DNA polymerase delta subunit 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
N309_00642	N309_04851	A0A099ZHW1	A0A099ZR50	DNA polymerase delta subunit 2.	Mitotic spindle assembly checkpoint protein MAD2B.	0.976
N309_00642	N309_08282	A0A099ZHW1	A0A099ZDN0	DNA polymerase delta subunit 2.	Polymerase delta-interacting protein 2.	0.516
N309_00642	N309_09812	A0A099ZHW1	A0A099ZLW9	DNA polymerase delta subunit 2.	Denticleless protein.	0.688
N309_00642	N309_11916	A0A099ZHW1	A0A099ZLL2	DNA polymerase delta subunit 2.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.849
N309_00642	N309_14691	A0A099ZHW1	A0A099Z928	DNA polymerase delta subunit 2.	DNA polymerase epsilon subunit 2.	0.865
N309_01987	N309_00531	A0A099Z5T6	A0A099ZCG1	DNA polymerase kappa.	DNA polymerase zeta catalytic subunit.	0.960
N309_01987	N309_00642	A0A099Z5T6	A0A099ZHW1	DNA polymerase kappa.	DNA polymerase delta subunit 2.	0.823
N309_01987	N309_03449	A0A099Z5T6	A0A099ZQC4	DNA polymerase kappa.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.990
N309_01987	N309_04239	A0A099Z5T6	A0A099Z8U9	DNA polymerase kappa.	SprT-like domain-containing protein.	0.681