32 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_06566	Rac GTPase-activating protein 1. (601 aa)
	N309_00056	Rho-associated protein kinase 1. (112 aa)
	N309_11830	Band 4.1-like 3. (645 aa)
	N309_15399	Rho-related GTP-binding protein Rho6. (219 aa)
	N309_00094	Rho-associated protein kinase 1. (59 aa)
	N309_04772	Ras-related C3 botulinum toxin substrate 2. (195 aa)
	N309_03744	Rho-related BTB domain-containing protein 1. (529 aa)
	N309_13024	Ezrin. (582 aa)
	N309_09739	Lethal(2) giant larvae protein 2. (695 aa)
	N309_06382	Rho-related GTP-binding protein RhoN. (166 aa)
	N309_05660	Nck-associated protein 1. (1092 aa)
	N309_12690	Rho-related GTP-binding protein RhoD. (192 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N309_14693	Protein 4.1. (486 aa)
	N309_06393	FH1/FH2 domain-containing protein 3. (1233 aa)
	N309_11083	A-kinase anchor protein 11. (1839 aa)
	N309_05651	Ras-related C3 botulinum toxin substrate 3. (180 aa)
	N309_06091	Rho-related GTP-binding protein RhoH. (191 aa)
	N309_09407	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (168 aa)
	N309_05874	Rac GTPase-activating protein 1. (155 aa)
	N309_10131	Rho-related GTP-binding protein RhoG. (191 aa)
	N309_01826	Rho-related GTP-binding protein RhoC. (175 aa)
	N309_00272	Formin-like 3. (330 aa)
	N309_10891	Pleckstrin. (341 aa)
	N309_01002	Rho-related BTB domain-containing protein 3. (607 aa)
	N309_03731	Inhibitor of nuclear factor kappa-B kinase subunit beta. (691 aa)
	N309_12422	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma. (433 aa)
	N309_05426	Band 4.1-like 2. (975 aa)
	N309_05452	Nck-associated protein 1-like. (136 aa)
	N309_13664	Ras-related C3 botulinum toxin substrate 1. (180 aa)
	N309_00236	Rho-related GTP-binding protein RhoG. (191 aa)
	N309_06134	Formin-like 1. (649 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00056	N309_00094	A0A099ZUZ5	A0A099ZTN2	Rho-associated protein kinase 1.	Rho-associated protein kinase 1.	0.900
N309_00056	N309_00236	A0A099ZUZ5	A0A099YT04	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoG.	0.641
N309_00056	N309_00272	A0A099ZUZ5	A0A099Z7Y9	Rho-associated protein kinase 1.	Formin-like 3.	0.468
N309_00056	N309_01002	A0A099ZUZ5	A0A099Z4T8	Rho-associated protein kinase 1.	Rho-related BTB domain-containing protein 3.	0.634
N309_00056	N309_01826	A0A099ZUZ5	A0A099Z896	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoC.	0.967
N309_00056	N309_03744	A0A099ZUZ5	A0A099ZRF2	Rho-associated protein kinase 1.	Rho-related BTB domain-containing protein 1.	0.746
N309_00056	N309_04772	A0A099ZUZ5	A0A099ZRN6	Rho-associated protein kinase 1.	Ras-related C3 botulinum toxin substrate 2.	0.646
N309_00056	N309_05651	A0A099ZUZ5	A0A099ZBB6	Rho-associated protein kinase 1.	Ras-related C3 botulinum toxin substrate 3.	0.646
N309_00056	N309_06091	A0A099ZUZ5	A0A099ZAQ3	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoH.	0.729
N309_00056	N309_06134	A0A099ZUZ5	A0A099YSF7	Rho-associated protein kinase 1.	Formin-like 1.	0.468
N309_00056	N309_06382	A0A099ZUZ5	A0A099ZPE2	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoN.	0.651
N309_00056	N309_06393	A0A099ZUZ5	A0A099ZKE9	Rho-associated protein kinase 1.	FH1/FH2 domain-containing protein 3.	0.811
N309_00056	N309_10131	A0A099ZUZ5	A0A099Z9I1	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoG.	0.641
N309_00056	N309_12690	A0A099ZUZ5	A0A099ZP30	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoD.	0.814
N309_00056	N309_13664	A0A099ZUZ5	A0A099YW30	Rho-associated protein kinase 1.	Ras-related C3 botulinum toxin substrate 1.	0.646
N309_00056	N309_15399	A0A099ZUZ5	A0A099ZTV2	Rho-associated protein kinase 1.	Rho-related GTP-binding protein Rho6.	0.837
N309_00094	N309_00056	A0A099ZTN2	A0A099ZUZ5	Rho-associated protein kinase 1.	Rho-associated protein kinase 1.	0.900
N309_00094	N309_00236	A0A099ZTN2	A0A099YT04	Rho-associated protein kinase 1.	Rho-related GTP-binding protein RhoG.	0.641
N309_00094	N309_00272	A0A099ZTN2	A0A099Z7Y9	Rho-associated protein kinase 1.	Formin-like 3.	0.468
N309_00094	N309_01002	A0A099ZTN2	A0A099Z4T8	Rho-associated protein kinase 1.	Rho-related BTB domain-containing protein 3.	0.634