(39 nodes) Microtubule polymerization or depolymerization network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_09754	Katanin p80 WD40 repeat-containing subunit B1. (658 aa)
	N309_12637	Nuclear distribution protein nudE 1. (344 aa)
	N309_13635	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (398 aa)
	N309_09283	Mitotic-spindle organizing protein 1. (49 aa)
	N309_01746	Centrosomal protein of 192 kDa. (1575 aa)
	N309_06599	Hepatoma-derived growth factor-related protein 3. (176 aa)
	N309_08950	Uncharacterized protein C16orf45. (170 aa)
	N309_12635	Uncharacterized protein C16orf45. (173 aa)
	N309_06094	HAUS augmin-like complex subunit 2. (163 aa)
	N309_14634	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (841 aa)
	N309_09874	Sjoegren syndrome nuclear autoantigen 1. (112 aa)
	N309_13794	SLAIN motif-containing protein-like. (330 aa)
	N309_01744	Uncharacterized protein. (262 aa)
	N309_04248	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (1031 aa)
	N309_05410	Tubulin polymerization-promoting protein. (173 aa)
	N309_01745	Uncharacterized protein. (154 aa)
	N309_07019	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (716 aa)
	N309_06352	SLAIN motif-containing protein 2. (454 aa)
	N309_13256	Nuclear distribution protein nudE-like 1. (323 aa)
	N309_06265	Cytoskeleton-associated protein 5. (2036 aa)
	N309_09476	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (637 aa)
	N309_11959	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (863 aa)
	N309_11237	Stathmin; Belongs to the stathmin family. (155 aa)
	N309_15297	Tubulin polymerization-promoting protein family member 3. (176 aa)
	N309_08084	Nck-associated protein 5. (171 aa)
	N309_09727	Centriole, cilia and spindle-associated protein. (151 aa)
	N309_06770	Microtubule-associated protein RP/EB family member 1. (263 aa)
	N309_08083	Nck-associated protein 5. (1491 aa)
	N309_09607	Zinc finger protein 207. (447 aa)
	N309_00519	Nck-associated protein 5. (104 aa)
	N309_06611	Kinesin-like KIF24; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1284 aa)
	N309_06765	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (586 aa)
	N309_09049	Uncharacterized protein. (61 aa)
	N309_12720	Stathmin; Belongs to the stathmin family. (173 aa)
	N309_06396	CLIP-associating protein 2. (952 aa)
	N309_07937	Tubulin polymerization-promoting protein family member 2. (165 aa)
	N309_06138	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (530 aa)
	N309_04096	Ninein-like. (98 aa)
	N309_06885	CLIP-associating protein 1. (1472 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00519	N309_08083	A0A099Z2C3	A0A099Z7P4	Nck-associated protein 5.	Nck-associated protein 5.	0.804
N309_00519	N309_08084	A0A099Z2C3	A0A099Z3P8	Nck-associated protein 5.	Nck-associated protein 5.	0.735
N309_01744	N309_01745	A0A099ZJZ7	A0A099ZME8	Uncharacterized protein.	Uncharacterized protein.	0.921
N309_01744	N309_01746	A0A099ZJZ7	A0A099ZI71	Uncharacterized protein.	Centrosomal protein of 192 kDa.	0.917
N309_01745	N309_01744	A0A099ZME8	A0A099ZJZ7	Uncharacterized protein.	Uncharacterized protein.	0.921
N309_01745	N309_01746	A0A099ZME8	A0A099ZI71	Uncharacterized protein.	Centrosomal protein of 192 kDa.	0.919
N309_01746	N309_01744	A0A099ZI71	A0A099ZJZ7	Centrosomal protein of 192 kDa.	Uncharacterized protein.	0.917
N309_01746	N309_01745	A0A099ZI71	A0A099ZME8	Centrosomal protein of 192 kDa.	Uncharacterized protein.	0.919
N309_04248	N309_06765	A0A099ZLS9	A0A099Z0P1	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.996
N309_04248	N309_09283	A0A099ZLS9	A0A099ZGI6	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Mitotic-spindle organizing protein 1.	0.998
N309_04248	N309_09476	A0A099ZLS9	A0A099ZVD2	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.997
N309_04248	N309_13635	A0A099ZLS9	A0A099ZCS8	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.986
N309_04248	N309_14634	A0A099ZLS9	A0A099Z8W8	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.992
N309_06094	N309_06265	A0A099ZBB2	A0A099ZW01	HAUS augmin-like complex subunit 2.	Cytoskeleton-associated protein 5.	0.585
N309_06094	N309_13635	A0A099ZBB2	A0A099ZCS8	HAUS augmin-like complex subunit 2.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.576
N309_06138	N309_06265	A0A099YUU0	A0A099ZW01	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Cytoskeleton-associated protein 5.	0.521
N309_06138	N309_06611	A0A099YUU0	A0A099Z1I8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like KIF24; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.568
N309_06138	N309_06770	A0A099YUU0	A0A099Z4P6	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Microtubule-associated protein RP/EB family member 1.	0.555
N309_06138	N309_07019	A0A099YUU0	A0A099ZMG0	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.922
N309_06138	N309_11959	A0A099YUU0	A0A099ZT77	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.530