(10 nodes) Dendrite terminus network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_13283	Intraflagellar transport protein 20 B. (93 aa)
	N309_07362	Microtubule-associated protein. (505 aa)
	N309_04246	Cytoplasmic FMR1-interacting protein 1. (1248 aa)
	N309_10704	Intraflagellar transport protein 52. (406 aa)
	N309_10706	Vesicular inhibitory amino acid transporter. (521 aa)
	N309_08184	Protein cordon-bleu. (423 aa)
	N309_05781	Cyclin-dependent kinase-like 5. (862 aa)
	N309_08185	Protein cordon-bleu. (849 aa)
	N309_00601	Vesicular inhibitory amino acid transporter. (383 aa)
	N309_00633	Intraflagellar transport protein 57. (361 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00633	N309_10704	A0A099ZN53	A0A099ZAE6	Intraflagellar transport protein 57.	Intraflagellar transport protein 52.	0.995
N309_00633	N309_13283	A0A099ZN53	A0A099ZTQ7	Intraflagellar transport protein 57.	Intraflagellar transport protein 20 B.	0.944
N309_08184	N309_08185	A0A099Z291	A0A099YZN2	Protein cordon-bleu.	Protein cordon-bleu.	0.900
N309_08185	N309_08184	A0A099YZN2	A0A099Z291	Protein cordon-bleu.	Protein cordon-bleu.	0.900
N309_10704	N309_00633	A0A099ZAE6	A0A099ZN53	Intraflagellar transport protein 52.	Intraflagellar transport protein 57.	0.995
N309_10704	N309_13283	A0A099ZAE6	A0A099ZTQ7	Intraflagellar transport protein 52.	Intraflagellar transport protein 20 B.	0.905
N309_13283	N309_00633	A0A099ZTQ7	A0A099ZN53	Intraflagellar transport protein 20 B.	Intraflagellar transport protein 57.	0.944
N309_13283	N309_10704	A0A099ZTQ7	A0A099ZAE6	Intraflagellar transport protein 20 B.	Intraflagellar transport protein 52.	0.905