21 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_00273	Solute carrier family 2, facilitated glucose transporter member 1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (390 aa)
	N309_11557	Rhodopsin. (350 aa)
	N309_13918	Bardet-Biedl syndrome 2 protein. (682 aa)
	N309_13045	Uncharacterized protein. (464 aa)
	N309_13465	Nucleoredoxin-like 2. (99 aa)
	N309_05317	Lebercilin. (414 aa)
	N309_09881	Nucleoredoxin-like 1. (200 aa)
	N309_02686	Ubiquitin carboxyl-terminal hydrolase 45. (537 aa)
	N309_15501	Retinitis pigmentosa 1-like 1 protein. (179 aa)
	N309_07546	DNA excision repair protein ERCC-6. (1507 aa)
	N309_08455	Bardet-Biedl syndrome 12 protein. (716 aa)
	N309_12573	DNA damage-regulated autophagy modulator protein 2. (266 aa)
	N309_08115	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (572 aa)
	N309_03370	Protein crumbs 1. (1379 aa)
	N309_03645	Fibropellin-1. (570 aa)
	N309_14845	Bardet-Biedl syndrome 4 protein. (510 aa)
	N309_01436	Usher syndrome type-1G protein. (469 aa)
	N309_15479	Oxygen-regulated protein 1. (1267 aa)
	N309_06890	IQ calmodulin-binding motif-containing protein 1. (583 aa)
	N309_14027	Clarin-1. (138 aa)
	N309_13891	Rootletin. (124 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_01436	N309_14027	A0A099YU65	A0A099YX60	Usher syndrome type-1G protein.	Clarin-1.	0.573
N309_07546	N309_13891	A0A099ZGC2	A0A099ZUM5	DNA excision repair protein ERCC-6.	Rootletin.	0.811
N309_08115	N309_08455	A0A099ZW39	A0A099ZHF1	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	Bardet-Biedl syndrome 12 protein.	0.889
N309_08115	N309_13918	A0A099ZW39	A0A099ZJL7	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	Bardet-Biedl syndrome 2 protein.	0.476
N309_08455	N309_08115	A0A099ZHF1	A0A099ZW39	Bardet-Biedl syndrome 12 protein.	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	0.889
N309_08455	N309_13918	A0A099ZHF1	A0A099ZJL7	Bardet-Biedl syndrome 12 protein.	Bardet-Biedl syndrome 2 protein.	0.663
N309_08455	N309_14845	A0A099ZHF1	A0A099ZPY5	Bardet-Biedl syndrome 12 protein.	Bardet-Biedl syndrome 4 protein.	0.638
N309_13891	N309_07546	A0A099ZUM5	A0A099ZGC2	Rootletin.	DNA excision repair protein ERCC-6.	0.811
N309_13891	N309_14845	A0A099ZUM5	A0A099ZPY5	Rootletin.	Bardet-Biedl syndrome 4 protein.	0.577
N309_13918	N309_08115	A0A099ZJL7	A0A099ZW39	Bardet-Biedl syndrome 2 protein.	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	0.476
N309_13918	N309_08455	A0A099ZJL7	A0A099ZHF1	Bardet-Biedl syndrome 2 protein.	Bardet-Biedl syndrome 12 protein.	0.663
N309_13918	N309_14845	A0A099ZJL7	A0A099ZPY5	Bardet-Biedl syndrome 2 protein.	Bardet-Biedl syndrome 4 protein.	0.992
N309_14027	N309_01436	A0A099YX60	A0A099YU65	Clarin-1.	Usher syndrome type-1G protein.	0.573
N309_14845	N309_08455	A0A099ZPY5	A0A099ZHF1	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 12 protein.	0.638
N309_14845	N309_13891	A0A099ZPY5	A0A099ZUM5	Bardet-Biedl syndrome 4 protein.	Rootletin.	0.577
N309_14845	N309_13918	A0A099ZPY5	A0A099ZJL7	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 2 protein.	0.992
N309_14845	N309_15479	A0A099ZPY5	A0A099YV58	Bardet-Biedl syndrome 4 protein.	Oxygen-regulated protein 1.	0.476
N309_15479	N309_14845	A0A099YV58	A0A099ZPY5	Oxygen-regulated protein 1.	Bardet-Biedl syndrome 4 protein.	0.476