(12 nodes) Regulation of cilium movement involved in cell motility network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_14509	Uncharacterized protein C7orf63. (880 aa)
	N309_09760	UPF0468 protein C16orf80. (165 aa)
	N309_10604	Substance-P receptor; Belongs to the G-protein coupled receptor 1 family. (316 aa)
	N309_14640	PR domain zinc finger protein 14. (327 aa)
	N309_01236	EF-hand calcium-binding domain-containing protein 1. (172 aa)
	N309_15543	Substance-K receptor; Belongs to the G-protein coupled receptor 1 family. (333 aa)
	N309_08115	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (572 aa)
	N309_03978	Neuromedin-K receptor; Belongs to the G-protein coupled receptor 1 family. (254 aa)
	N309_13918	Bardet-Biedl syndrome 2 protein. (682 aa)
	N309_05231	UPF0704 protein C6orf165. (622 aa)
	N309_12888	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (798 aa)
	N309_14845	Bardet-Biedl syndrome 4 protein. (510 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_01236	N309_09760	A0A099YZE7	A0A099ZBP3	EF-hand calcium-binding domain-containing protein 1.	UPF0468 protein C16orf80.	0.597
N309_08115	N309_13918	A0A099ZW39	A0A099ZJL7	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	Bardet-Biedl syndrome 2 protein.	0.476
N309_09760	N309_01236	A0A099ZBP3	A0A099YZE7	UPF0468 protein C16orf80.	EF-hand calcium-binding domain-containing protein 1.	0.597
N309_13918	N309_08115	A0A099ZJL7	A0A099ZW39	Bardet-Biedl syndrome 2 protein.	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin.	0.476
N309_13918	N309_14845	A0A099ZJL7	A0A099ZPY5	Bardet-Biedl syndrome 2 protein.	Bardet-Biedl syndrome 4 protein.	0.992
N309_14845	N309_13918	A0A099ZPY5	A0A099ZJL7	Bardet-Biedl syndrome 4 protein.	Bardet-Biedl syndrome 2 protein.	0.992