(11 nodes) Left/right pattern formation network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_07471	Histone-lysine N-methyltransferase SETDB2. (721 aa)
	N309_07454	Dynein assembly factor 1, axonemal. (252 aa)
	N309_14646	Pituitary homeobox 2. (253 aa)
	N309_04220	Protein DPCD. (182 aa)
	N309_03304	Homeobox protein Nkx-2.5. (203 aa)
	N309_06078	Clusterin-associated protein 1. (407 aa)
	N309_00633	Intraflagellar transport protein 57. (361 aa)
	N309_02791	Band 4.1-like 5. (579 aa)
	N309_13836	ADP-ribosylation factor-like 13B. (349 aa)
	N309_11337	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (604 aa)
	N309_00885	Heat shock protein beta-11. (102 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00633	N309_00885	A0A099ZN53	A0A099Z135	Intraflagellar transport protein 57.	Heat shock protein beta-11.	0.910
N309_00633	N309_06078	A0A099ZN53	A0A099ZNR9	Intraflagellar transport protein 57.	Clusterin-associated protein 1.	0.995
N309_00885	N309_00633	A0A099Z135	A0A099ZN53	Heat shock protein beta-11.	Intraflagellar transport protein 57.	0.910
N309_00885	N309_06078	A0A099Z135	A0A099ZNR9	Heat shock protein beta-11.	Clusterin-associated protein 1.	0.885
N309_06078	N309_00633	A0A099ZNR9	A0A099ZN53	Clusterin-associated protein 1.	Intraflagellar transport protein 57.	0.995
N309_06078	N309_00885	A0A099ZNR9	A0A099Z135	Clusterin-associated protein 1.	Heat shock protein beta-11.	0.885