(37 nodes) Neuron projection cytoplasm network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_10241	Paraplegin. (738 aa)
	N309_06604	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (382 aa)
	N309_13193	Syntabulin. (571 aa)
	N309_01149	F-box/WD repeat-containing protein 11. (552 aa)
	N309_05095	Neurofilament light polypeptide; Belongs to the intermediate filament family. (156 aa)
	N309_02723	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (635 aa)
	N309_07092	Actin-related protein 10; Belongs to the actin family. (417 aa)
	N309_07851	Trafficking kinesin-binding protein 2. (831 aa)
	N309_02257	Ran GTPase-activating protein 1. (552 aa)
	N309_11067	ADP-ribosylation factor-like 8B-A; Belongs to the small GTPase superfamily. Arf family. (143 aa)
	PAFAH1B1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	N309_00661	Kinesin-1 heavy chain. (67 aa)
	N309_07362	Microtubule-associated protein. (505 aa)
	N309_04540	Transmembrane protein 108. (357 aa)
	N309_05224	Biogenesis of lysosome-related organelles complex 1 subunit 5. (148 aa)
	N309_00660	Kinesin-1 heavy chain. (151 aa)
	N309_05223	Eukaryotic translation elongation factor 1 epsilon-1. (145 aa)
	N309_09829	Fragile X mental retardation protein 1 B. (551 aa)
	N309_13291	ADP-ribosylation factor-like 8A; Belongs to the small GTPase superfamily. Arf family. (143 aa)
	N309_10111	Biogenesis of lysosome-related organelles complex 1 subunit 4. (136 aa)
	N309_02799	Dual specificity mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily. (366 aa)
	N309_15059	ADP-ribosylation factor-like 8B; Belongs to the small GTPase superfamily. Arf family. (145 aa)
	N309_14200	Dysbindin. (331 aa)
	N309_03733	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family. (396 aa)
	N309_02858	Biogenesis of lysosome-related organelles complex 1 subunit 6. (114 aa)
	N309_15015	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (915 aa)
	N309_05781	Cyclin-dependent kinase-like 5. (862 aa)
	N309_04522	Trafficking kinesin-binding protein 1. (858 aa)
	N309_04263	Leucine-rich repeat serine/threonine-protein kinase 2. (2452 aa)
	N309_15167	Brain-specific angiogenesis inhibitor 1-associated protein 2. (492 aa)
	N309_01233	Biogenesis of lysosome-related organelles complex 1 subunit 2. (79 aa)
	N309_05604	AP-3 complex subunit beta-2. (836 aa)
	N309_04609	Spastin; Belongs to the AAA ATPase family. (478 aa)
	N309_13015	AP-3 complex subunit delta-1. (787 aa)
	N309_05858	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (88 aa)
	N309_14428	Serine/threonine-protein kinase Kist. (327 aa)
	N309_05857	Kinesin-like KIF17. (162 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00660	N309_02723	A0A099ZIW4	A0A099ZSI8	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.930
N309_00660	N309_04522	A0A099ZIW4	A0A099Z0N8	Kinesin-1 heavy chain.	Trafficking kinesin-binding protein 1.	0.494
N309_00660	N309_05095	A0A099ZIW4	A0A099ZTZ0	Kinesin-1 heavy chain.	Neurofilament light polypeptide; Belongs to the intermediate filament family.	0.628
N309_00660	N309_05857	A0A099ZIW4	A0A099YQP0	Kinesin-1 heavy chain.	Kinesin-like KIF17.	0.416
N309_00660	N309_05858	A0A099ZIW4	A0A099YVM6	Kinesin-1 heavy chain.	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.416
N309_00660	N309_07092	A0A099ZIW4	A0A099ZRG0	Kinesin-1 heavy chain.	Actin-related protein 10; Belongs to the actin family.	0.524
N309_00660	N309_07851	A0A099ZIW4	A0A099ZQG0	Kinesin-1 heavy chain.	Trafficking kinesin-binding protein 2.	0.494
N309_00660	N309_15015	A0A099ZIW4	A0A099Z327	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.679
N309_00661	N309_04522	A0A099ZLF4	A0A099Z0N8	Kinesin-1 heavy chain.	Trafficking kinesin-binding protein 1.	0.494
N309_00661	N309_05095	A0A099ZLF4	A0A099ZTZ0	Kinesin-1 heavy chain.	Neurofilament light polypeptide; Belongs to the intermediate filament family.	0.628
N309_00661	N309_05857	A0A099ZLF4	A0A099YQP0	Kinesin-1 heavy chain.	Kinesin-like KIF17.	0.416
N309_00661	N309_05858	A0A099ZLF4	A0A099YVM6	Kinesin-1 heavy chain.	Kinesin-like KIF17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.416
N309_00661	N309_07092	A0A099ZLF4	A0A099ZRG0	Kinesin-1 heavy chain.	Actin-related protein 10; Belongs to the actin family.	0.524
N309_00661	N309_07851	A0A099ZLF4	A0A099ZQG0	Kinesin-1 heavy chain.	Trafficking kinesin-binding protein 2.	0.494
N309_00661	N309_15015	A0A099ZLF4	A0A099Z327	Kinesin-1 heavy chain.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.679
N309_01233	N309_02858	A0A099YZP7	A0A099Z3I6	Biogenesis of lysosome-related organelles complex 1 subunit 2.	Biogenesis of lysosome-related organelles complex 1 subunit 6.	0.752
N309_01233	N309_05224	A0A099YZP7	A0A099ZK50	Biogenesis of lysosome-related organelles complex 1 subunit 2.	Biogenesis of lysosome-related organelles complex 1 subunit 5.	0.645
N309_01233	N309_10111	A0A099YZP7	A0A099ZCQ6	Biogenesis of lysosome-related organelles complex 1 subunit 2.	Biogenesis of lysosome-related organelles complex 1 subunit 4.	0.563
N309_01233	N309_14200	A0A099YZP7	A0A099Z8G9	Biogenesis of lysosome-related organelles complex 1 subunit 2.	Dysbindin.	0.507
N309_02723	N309_00660	A0A099ZSI8	A0A099ZIW4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin-1 heavy chain.	0.930