25 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_10894	BAG family molecular chaperone regulator 1. (194 aa)
	N309_07429	Splicing factor 3A subunit 1. (790 aa)
	N309_06524	Ubiquitin-like domain-containing CTD phosphatase 1. (318 aa)
	N309_15697	UV excision repair protein RAD23 B. (356 aa)
	N309_00547	Ubiquitin carboxyl-terminal hydrolase 48. (995 aa)
	N309_07989	Ubiquilin-1. (531 aa)
	N309_10163	Ubiquitin carboxyl-terminal hydrolase. (490 aa)
	N309_08694	Ubiquilin-4. (551 aa)
	N309_03079	2'-5'-oligoadenylate synthase-like 2. (498 aa)
	N309_13025	Small ubiquitin-related modifier. (89 aa)
	N309_05499	Ubiquitin-like 7. (155 aa)
	N309_01226	Ankyrin repeat domain-containing protein 60. (219 aa)
	N309_10588	Small ubiquitin-related modifier. (86 aa)
	N309_12383	Tubulin-specific chaperone E. (529 aa)
	N309_14992	AN1-type zinc finger protein 4. (717 aa)
	N309_08544	Ubiquilin-1. (525 aa)
	N309_05665	Polyubiquitin-C. (228 aa)
	N309_07779	Tubulin-specific chaperone cofactor E-like. (424 aa)
	N309_03823	Ubiquitin carboxyl-terminal hydrolase 32. (1591 aa)
	N309_10738	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	N309_08062	Small ubiquitin-related modifier. (100 aa)
	N309_05978	Ubiquitin domain-containing protein 2. (200 aa)
	N309_05195	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein. (395 aa)
	N309_04588	Ubiquitin-like 3. (109 aa)
	N309_07621	NEDD8 ultimate buster 1. (607 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00547	N309_03079	A0A099YVU3	A0A099ZUW1	Ubiquitin carboxyl-terminal hydrolase 48.	2'-5'-oligoadenylate synthase-like 2.	0.760
N309_00547	N309_05499	A0A099YVU3	A0A099ZRR1	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquitin-like 7.	0.714
N309_00547	N309_05665	A0A099YVU3	A0A099ZFY2	Ubiquitin carboxyl-terminal hydrolase 48.	Polyubiquitin-C.	0.760
N309_00547	N309_07989	A0A099YVU3	A0A099YVS3	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquilin-1.	0.650
N309_00547	N309_08544	A0A099YVU3	A0A099ZGD6	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquilin-1.	0.650
N309_00547	N309_08694	A0A099YVU3	A0A099YPP9	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquilin-4.	0.667
N309_00547	N309_10163	A0A099YVU3	A0A099YU63	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquitin carboxyl-terminal hydrolase.	0.457
N309_00547	N309_10738	A0A099YVU3	A0A099ZB74	Ubiquitin carboxyl-terminal hydrolase 48.	Ubiquitin-40S ribosomal protein S27a.	0.875
N309_00547	N309_14992	A0A099YVU3	A0A099ZI35	Ubiquitin carboxyl-terminal hydrolase 48.	AN1-type zinc finger protein 4.	0.761
N309_00547	N309_15697	A0A099YVU3	A0A099Z186	Ubiquitin carboxyl-terminal hydrolase 48.	UV excision repair protein RAD23 B.	0.731
N309_01226	N309_03079	A0A099ZMB2	A0A099ZUW1	Ankyrin repeat domain-containing protein 60.	2'-5'-oligoadenylate synthase-like 2.	0.409
N309_01226	N309_05665	A0A099ZMB2	A0A099ZFY2	Ankyrin repeat domain-containing protein 60.	Polyubiquitin-C.	0.585
N309_01226	N309_10738	A0A099ZMB2	A0A099ZB74	Ankyrin repeat domain-containing protein 60.	Ubiquitin-40S ribosomal protein S27a.	0.587
N309_01226	N309_14992	A0A099ZMB2	A0A099ZI35	Ankyrin repeat domain-containing protein 60.	AN1-type zinc finger protein 4.	0.538
N309_03079	N309_00547	A0A099ZUW1	A0A099YVU3	2'-5'-oligoadenylate synthase-like 2.	Ubiquitin carboxyl-terminal hydrolase 48.	0.760
N309_03079	N309_01226	A0A099ZUW1	A0A099ZMB2	2'-5'-oligoadenylate synthase-like 2.	Ankyrin repeat domain-containing protein 60.	0.409
N309_03079	N309_03823	A0A099ZUW1	A0A099Z9G1	2'-5'-oligoadenylate synthase-like 2.	Ubiquitin carboxyl-terminal hydrolase 32.	0.613
N309_03079	N309_05499	A0A099ZUW1	A0A099ZRR1	2'-5'-oligoadenylate synthase-like 2.	Ubiquitin-like 7.	0.743
N309_03079	N309_06524	A0A099ZUW1	A0A099Z2A0	2'-5'-oligoadenylate synthase-like 2.	Ubiquitin-like domain-containing CTD phosphatase 1.	0.765
N309_03079	N309_07621	A0A099ZUW1	A0A099ZE20	2'-5'-oligoadenylate synthase-like 2.	NEDD8 ultimate buster 1.	0.685