34 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_10791	Cell division cycle protein 27. (825 aa)
	N309_08198	Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily. (324 aa)
	N309_08692	Homeobox protein DBX2. (196 aa)
	N309_00010	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (86 aa)
	N309_12258	Cyclin-A2; Belongs to the cyclin family. (280 aa)
	N309_00009	Uncharacterized protein. (39 aa)
	N309_06356	T-cell leukemia homeobox protein 1. (174 aa)
	N309_05423	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	N309_12355	Cyclin-A1; Belongs to the cyclin family. (364 aa)
	N309_09335	Homeobox protein DBX1. (225 aa)
	N309_05074	BarH-like 1 homeobox protein. (52 aa)
	N309_14875	Ribosomal protein S6 kinase 2 alpha. (717 aa)
	N309_03772	Mitogen-activated protein kinase. (318 aa)
	N309_00927	Anaphase-promoting complex subunit 16. (70 aa)
	N309_01356	Anaphase-promoting complex subunit 2; Belongs to the cullin family. (783 aa)
	N309_15039	Histone H2B; Belongs to the histone H2B family. (92 aa)
	N309_15044	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (80 aa)
	N309_09349	Ribosomal protein S6 kinase alpha-2. (700 aa)
	N309_01979	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (185 aa)
	N309_02167	Cyclin-dependent kinase inhibitor 1. (54 aa)
	N309_12214	Anaphase-promoting complex subunit 7. (555 aa)
	N309_12219	Anaphase-promoting complex subunit 5. (688 aa)
	N309_00706	Cyclin-dependent kinase inhibitor 1B. (48 aa)
	N309_00708	Cyclin-dependent kinase inhibitor 1B. (198 aa)
	N309_00346	KxDL motif-containing protein 1. (141 aa)
	N309_12222	Cell division cycle protein 16. (608 aa)
	N309_05402	Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (322 aa)
	N309_10738	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	N309_05218	Cell division cycle protein 23. (520 aa)
	N309_10729	H2.0-like homeobox protein. (162 aa)
	N309_14553	Cyclin-dependent kinase 4 inhibitor C. (112 aa)
	N309_05665	Polyubiquitin-C. (228 aa)
	N309_09647	Transmembrane 7 superfamily member 3. (546 aa)
	N309_00727	Anaphase-promoting complex subunit 1. (1266 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00009	N309_01356	A0A099ZWR8	A0A099YR40	Uncharacterized protein.	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	0.509
N309_00009	N309_01979	A0A099ZWR8	A0A099YXV7	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.489
N309_00009	N309_03772	A0A099ZWR8	A0A099ZKN9	Uncharacterized protein.	Mitogen-activated protein kinase.	0.625
N309_00009	N309_05218	A0A099ZWR8	A0A099ZBU2	Uncharacterized protein.	Cell division cycle protein 23.	0.518
N309_00009	N309_05402	A0A099ZWR8	A0A099Z9I5	Uncharacterized protein.	Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily.	0.855
N309_00009	N309_05665	A0A099ZWR8	A0A099ZFY2	Uncharacterized protein.	Polyubiquitin-C.	0.790
N309_00009	N309_08198	A0A099ZWR8	A0A099ZSK0	Uncharacterized protein.	Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.	0.910
N309_00009	N309_10738	A0A099ZWR8	A0A099ZB74	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.789
N309_00009	N309_10791	A0A099ZWR8	A0A099ZK42	Uncharacterized protein.	Cell division cycle protein 27.	0.567
N309_00009	N309_12258	A0A099ZWR8	A0A099ZUF7	Uncharacterized protein.	Cyclin-A2; Belongs to the cyclin family.	0.907
N309_00009	N309_12355	A0A099ZWR8	A0A099ZNJ7	Uncharacterized protein.	Cyclin-A1; Belongs to the cyclin family.	0.891
N309_00009	N309_14553	A0A099ZWR8	A0A099ZFP2	Uncharacterized protein.	Cyclin-dependent kinase 4 inhibitor C.	0.537
N309_00010	N309_03772	A0A099ZTE9	A0A099ZKN9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Mitogen-activated protein kinase.	0.436
N309_00010	N309_05402	A0A099ZTE9	A0A099Z9I5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily.	0.576
N309_00010	N309_05665	A0A099ZTE9	A0A099ZFY2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Polyubiquitin-C.	0.907
N309_00010	N309_08198	A0A099ZTE9	A0A099ZSK0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.	0.576
N309_00010	N309_10738	A0A099ZTE9	A0A099ZB74	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Ubiquitin-40S ribosomal protein S27a.	0.909
N309_00010	N309_10791	A0A099ZTE9	A0A099ZK42	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Cell division cycle protein 27.	0.423
N309_00010	N309_15039	A0A099ZTE9	A0A099YSV0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H2B; Belongs to the histone H2B family.	0.844
N309_00346	N309_05665	A0A099Z7V5	A0A099ZFY2	KxDL motif-containing protein 1.	Polyubiquitin-C.	0.743