30 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_11513	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (879 aa)
	N309_08749	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (540 aa)
	N309_10143	Calreticulin. (398 aa)
	N309_05737	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase. (611 aa)
	N309_13527	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (439 aa)
	N309_13111	E3 ubiquitin-protein ligase RNF103. (479 aa)
	N309_02785	E3 ubiquitin-protein ligase MARCH7. (680 aa)
	N309_15192	Protein disulfide-isomerase. (609 aa)
	N309_06849	E3 ubiquitin-protein ligase RNF139. (610 aa)
	N309_14960	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (309 aa)
	N309_06994	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (811 aa)
	N309_00346	KxDL motif-containing protein 1. (141 aa)
	N309_06671	E3 ubiquitin-protein ligase MARCH4. (237 aa)
	N309_15128	E3 ubiquitin-protein ligase MARCH6. (904 aa)
	N309_10738	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	N309_07793	UDP-glucose:glycoprotein glucosyltransferase 1. (1518 aa)
	N309_06221	Calnexin. (606 aa)
	N309_05665	Polyubiquitin-C. (228 aa)
	N309_03134	UDP-glucose:glycoprotein glucosyltransferase 2. (1006 aa)
	N309_13608	Calnexin. (444 aa)
	N309_14001	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (642 aa)
	N309_15511	E3 ubiquitin-protein ligase MARCH2. (123 aa)
	N309_13915	E3 ubiquitin-protein ligase AMFR. (558 aa)
	N309_01130	E3 ubiquitin-protein ligase MARCH2. (126 aa)
	N309_00667	E3 ubiquitin-protein ligase MARCH1. (156 aa)
	N309_02177	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (249 aa)
	N309_14236	E3 ubiquitin-protein ligase MARCH3. (141 aa)
	N309_06423	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family. (680 aa)
	N309_13359	E3 ubiquitin-protein ligase MARCH8. (494 aa)
	N309_09483	Protein disulfide-isomerase. (427 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00346	N309_05665	A0A099Z7V5	A0A099ZFY2	KxDL motif-containing protein 1.	Polyubiquitin-C.	0.743
N309_00346	N309_10738	A0A099Z7V5	A0A099ZB74	KxDL motif-containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.857
N309_00667	N309_06423	A0A099ZM97	A0A099ZNH4	E3 ubiquitin-protein ligase MARCH1.	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	0.494
N309_00667	N309_06994	A0A099ZM97	A0A099Z7K8	E3 ubiquitin-protein ligase MARCH1.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.494
N309_01130	N309_06423	A0A099ZLC0	A0A099ZNH4	E3 ubiquitin-protein ligase MARCH2.	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	0.494
N309_01130	N309_06994	A0A099ZLC0	A0A099Z7K8	E3 ubiquitin-protein ligase MARCH2.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.494
N309_01130	N309_15511	A0A099ZLC0	A0A099ZIU0	E3 ubiquitin-protein ligase MARCH2.	E3 ubiquitin-protein ligase MARCH2.	0.889
N309_02177	N309_05665	A0A099ZMC9	A0A099ZFY2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Polyubiquitin-C.	0.630
N309_02177	N309_05737	A0A099ZMC9	A0A099YVZ1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.	0.886
N309_02177	N309_06221	A0A099ZMC9	A0A099ZFU2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Calnexin.	0.448
N309_02177	N309_06423	A0A099ZMC9	A0A099ZNH4	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	0.970
N309_02177	N309_06849	A0A099ZMC9	A0A099Z6K3	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase RNF139.	0.774
N309_02177	N309_06994	A0A099ZMC9	A0A099Z7K8	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.991
N309_02177	N309_08749	A0A099ZMC9	A0A099YSR8	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.465
N309_02177	N309_10738	A0A099ZMC9	A0A099ZB74	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin-40S ribosomal protein S27a.	0.619
N309_02177	N309_13527	A0A099ZMC9	A0A099YWF2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.883
N309_02177	N309_13608	A0A099ZMC9	A0A099ZG75	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Calnexin.	0.448
N309_02177	N309_13915	A0A099ZMC9	A0A099ZL82	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase AMFR.	0.971
N309_02177	N309_14960	A0A099ZMC9	A0A099Z6Y9	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.564
N309_02177	N309_15128	A0A099ZMC9	A0A099ZB72	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase MARCH6.	0.669