59 items (Tinamus guttatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_15691	DNA-directed RNA polymerase II subunit RPB11-a. (69 aa)
	N309_11973	Cyclin-H; Belongs to the cyclin family. (300 aa)
	N309_07978	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (126 aa)
	N309_14911	Cullin-4A; Belongs to the cullin family. (504 aa)
	N309_02586	DNA damage-binding protein 1. (1118 aa)
	N309_04747	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (232 aa)
	N309_12932	DNA repair protein complementing XP-A cells. (57 aa)
	N309_04332	General transcription factor IIH subunit 5. (68 aa)
	N309_02578	Pre-mRNA-processing factor 19. (479 aa)
	N309_07986	Replication factor C subunit 4. (318 aa)
	N309_14064	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (183 aa)
	N309_14244	DNA excision repair protein ERCC-8. (374 aa)
	N309_03449	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	N309_04704	General transcription factor IIH subunit 3. (275 aa)
	N309_04791	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (96 aa)
	N309_05679	RING-box protein 1. (78 aa)
	N309_04396	UV-stimulated scaffold protein A. (182 aa)
	N309_15236	DNA-directed RNA polymerase II subunit RPB3. (246 aa)
	N309_07138	Replication protein A 32 kDa subunit. (203 aa)
	N309_07603	General transcription factor IIH subunit 1. (548 aa)
	N309_09218	Cyclin-dependent kinase 7. (316 aa)
	N309_08225	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	N309_06780	Transcription elongation factor A N-terminal and central domain-containing protein. (362 aa)
	N309_07514	PHD finger protein 3. (1336 aa)
	N309_00642	DNA polymerase delta subunit 2. (250 aa)
	N309_11040	DNA polymerase epsilon subunit 3. (121 aa)
	N309_09271	Replication factor C subunit 2. (316 aa)
	N309_09143	ATPase family AAA domain-containing protein 5. (1773 aa)
	N309_07546	DNA excision repair protein ERCC-6. (1507 aa)
	N309_07789	DNA-directed RNA polymerase II subunit RPB4. (119 aa)
	N309_05665	Polyubiquitin-C. (228 aa)
	N309_12176	Transcription elongation factor A protein 2. (283 aa)
	N309_06856	Non-histone chromosomal protein HMG-14. (60 aa)
	N309_13215	DNA-directed RNA polymerase II subunit RPB7. (79 aa)
	N309_10738	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	N309_00725	Zinc finger protein 830. (236 aa)
	N309_14691	DNA polymerase epsilon subunit 2. (294 aa)
	N309_06266	Replication factor C subunit 3. (356 aa)
	N309_12063	Non-histone chromosomal protein HMG-17. (85 aa)
	N309_09319	Transcription elongation factor A protein 3. (287 aa)
	N309_00346	KxDL motif-containing protein 1. (141 aa)
	N309_06665	TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
	N309_05550	Meiosis-specific with OB domain-containing protein. (476 aa)
	N309_05592	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	N309_13924	DNA repair protein complementing XP-G cells. (1127 aa)
	N309_01987	DNA polymerase kappa. (868 aa)
	N309_02197	Replication factor C subunit 5. (301 aa)
	N309_05789	Ubiquitin carboxyl-terminal hydrolase 7. (1076 aa)
	N309_07469	RCC1 and BTB domain-containing protein 1. (532 aa)
	N309_11372	Transcription elongation factor A N-terminal and central domain-containing protein 2. (175 aa)
	N309_15003	Pre-mRNA-splicing factor ISY1. (219 aa)
	N309_12588	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (531 aa)
	N309_03790	CDK-activating kinase assembly factor MAT1. (279 aa)
	N309_10967	Replication protein A 14 kDa subunit. (101 aa)
	N309_15110	RCC1 and BTB domain-containing protein 2. (530 aa)
	N309_15485	Transcription elongation factor A protein 1. (283 aa)
	N309_01939	Cullin-4B; Belongs to the cullin family. (875 aa)
	N309_13528	Protein NRDE2. (1146 aa)
	N309_10243	TFIIH basal transcription factor complex helicase XPD subunit. (611 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00346	N309_05665	A0A099Z7V5	A0A099ZFY2	KxDL motif-containing protein 1.	Polyubiquitin-C.	0.743
N309_00346	N309_10738	A0A099Z7V5	A0A099ZB74	KxDL motif-containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.857
N309_00642	N309_01987	A0A099ZHW1	A0A099Z5T6	DNA polymerase delta subunit 2.	DNA polymerase kappa.	0.823
N309_00642	N309_02197	A0A099ZHW1	A0A099Z495	DNA polymerase delta subunit 2.	Replication factor C subunit 5.	0.813
N309_00642	N309_02586	A0A099ZHW1	A0A099ZU85	DNA polymerase delta subunit 2.	DNA damage-binding protein 1.	0.618
N309_00642	N309_03449	A0A099ZHW1	A0A099ZQC4	DNA polymerase delta subunit 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
N309_00642	N309_05550	A0A099ZHW1	A0A099Z7D6	DNA polymerase delta subunit 2.	Meiosis-specific with OB domain-containing protein.	0.700
N309_00642	N309_05679	A0A099ZHW1	A0A099ZLY4	DNA polymerase delta subunit 2.	RING-box protein 1.	0.608
N309_00642	N309_06266	A0A099ZHW1	A0A099Z8H2	DNA polymerase delta subunit 2.	Replication factor C subunit 3.	0.854
N309_00642	N309_07138	A0A099ZHW1	A0A099ZKV9	DNA polymerase delta subunit 2.	Replication protein A 32 kDa subunit.	0.743
N309_00642	N309_07986	A0A099ZHW1	A0A099ZSJ9	DNA polymerase delta subunit 2.	Replication factor C subunit 4.	0.878
N309_00642	N309_09143	A0A099ZHW1	A0A099ZGC5	DNA polymerase delta subunit 2.	ATPase family AAA domain-containing protein 5.	0.772
N309_00642	N309_09271	A0A099ZHW1	A0A099ZGG4	DNA polymerase delta subunit 2.	Replication factor C subunit 2.	0.822
N309_00642	N309_10243	A0A099ZHW1	A0A099YS43	DNA polymerase delta subunit 2.	TFIIH basal transcription factor complex helicase XPD subunit.	0.587
N309_00642	N309_10967	A0A099ZHW1	A0A099YYB2	DNA polymerase delta subunit 2.	Replication protein A 14 kDa subunit.	0.709
N309_00642	N309_11040	A0A099ZHW1	A0A099ZGU4	DNA polymerase delta subunit 2.	DNA polymerase epsilon subunit 3.	0.851
N309_00642	N309_12588	A0A099ZHW1	A0A099Z031	DNA polymerase delta subunit 2.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.726
N309_00642	N309_13924	A0A099ZHW1	A0A099Z757	DNA polymerase delta subunit 2.	DNA repair protein complementing XP-G cells.	0.878
N309_00642	N309_14691	A0A099ZHW1	A0A099Z928	DNA polymerase delta subunit 2.	DNA polymerase epsilon subunit 2.	0.865
N309_00725	N309_02578	A0A099ZAT1	A0A099ZSQ0	Zinc finger protein 830.	Pre-mRNA-processing factor 19.	0.963