(14 nodes) Mitochondrial calcium ion transport network (Tinamus guttatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N309_10032	ATP-dependent zinc metalloprotease YME1L1. (712 aa)
	N309_06387	Prohibitin. (272 aa)
	N309_00323	Mitochondrial calcium uniporter regulatory subunit MCUb. (281 aa)
	N309_00945	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family. (425 aa)
	N309_10241	Paraplegin. (738 aa)
	N309_03549	Uncharacterized protein. (178 aa)
	N309_13448	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (524 aa)
	N309_11823	Uncharacterized protein. (398 aa)
	N309_03819	MCU domain-containing protein. (281 aa)
	N309_14078	Prohibitin. (251 aa)
	N309_03350	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family. (464 aa)
	N309_00824	Rhomboid domain-containing protein. (263 aa)
	N309_12948	AFG3-like 2. (779 aa)
	N309_06344	Uncharacterized protein. (353 aa)

Your Current Organism:

Tinamus guttatus

NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N309_00323	N309_03819	A0A099ZNX8	A0A099Z6J0	Mitochondrial calcium uniporter regulatory subunit MCUb.	MCU domain-containing protein.	0.537
N309_00323	N309_06344	A0A099ZNX8	A0A099YS02	Mitochondrial calcium uniporter regulatory subunit MCUb.	Uncharacterized protein.	0.952
N309_00323	N309_06387	A0A099ZNX8	A0A099ZPE7	Mitochondrial calcium uniporter regulatory subunit MCUb.	Prohibitin.	0.602
N309_00323	N309_10032	A0A099ZNX8	A0A099YXI0	Mitochondrial calcium uniporter regulatory subunit MCUb.	ATP-dependent zinc metalloprotease YME1L1.	0.528
N309_00323	N309_10241	A0A099ZNX8	A0A099ZJP6	Mitochondrial calcium uniporter regulatory subunit MCUb.	Paraplegin.	0.613
N309_00323	N309_11823	A0A099ZNX8	A0A099Z7K3	Mitochondrial calcium uniporter regulatory subunit MCUb.	Uncharacterized protein.	0.746
N309_00323	N309_12948	A0A099ZNX8	A0A099YY99	Mitochondrial calcium uniporter regulatory subunit MCUb.	AFG3-like 2.	0.620
N309_00323	N309_14078	A0A099ZNX8	A0A099Z1Y1	Mitochondrial calcium uniporter regulatory subunit MCUb.	Prohibitin.	0.645
N309_00824	N309_00945	A0A099YYN1	A0A099ZJS0	Rhomboid domain-containing protein.	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	0.508
N309_00824	N309_06387	A0A099YYN1	A0A099ZPE7	Rhomboid domain-containing protein.	Prohibitin.	0.617
N309_00824	N309_10032	A0A099YYN1	A0A099YXI0	Rhomboid domain-containing protein.	ATP-dependent zinc metalloprotease YME1L1.	0.821
N309_00824	N309_10241	A0A099YYN1	A0A099ZJP6	Rhomboid domain-containing protein.	Paraplegin.	0.695
N309_00824	N309_12948	A0A099YYN1	A0A099YY99	Rhomboid domain-containing protein.	AFG3-like 2.	0.688
N309_00824	N309_14078	A0A099YYN1	A0A099Z1Y1	Rhomboid domain-containing protein.	Prohibitin.	0.795
N309_00945	N309_00824	A0A099ZJS0	A0A099YYN1	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	Rhomboid domain-containing protein.	0.508
N309_00945	N309_03350	A0A099ZJS0	A0A099YZ77	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.980
N309_00945	N309_03549	A0A099ZJS0	A0A099ZEV4	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	Uncharacterized protein.	0.614
N309_00945	N309_06387	A0A099ZJS0	A0A099ZPE7	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	Prohibitin.	0.833
N309_00945	N309_10032	A0A099ZJS0	A0A099YXI0	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	ATP-dependent zinc metalloprotease YME1L1.	0.695
N309_00945	N309_10241	A0A099ZJS0	A0A099ZJP6	Mitochondrial-processing peptidase subunit alpha; Belongs to the peptidase M16 family.	Paraplegin.	0.802