STRINGSTRING
N309_12735 N309_12735 N309_11973 N309_11973 N309_14911 N309_14911 N309_10907 N309_10907 N309_02586 N309_02586 N309_00129 N309_00129 N309_12932 N309_12932 N309_07842 N309_07842 N309_04332 N309_04332 N309_07986 N309_07986 N309_14244 N309_14244 N309_07648 N309_07648 N309_03449 N309_03449 N309_04704 N309_04704 N309_10974 N309_10974 N309_05679 N309_05679 N309_07138 N309_07138 N309_07603 N309_07603 N309_09218 N309_09218 N309_00642 N309_00642 N309_08454 N309_08454 N309_11040 N309_11040 N309_09271 N309_09271 N309_09143 N309_09143 N309_07546 N309_07546 N309_14691 N309_14691 N309_06266 N309_06266 N309_06665 N309_06665 N309_05550 N309_05550 N309_13924 N309_13924 N309_02197 N309_02197 N309_08924 N309_08924 N309_02375 N309_02375 N309_15697 N309_15697 N309_12588 N309_12588 N309_03790 N309_03790 N309_10967 N309_10967 N309_15687 N309_15687 N309_06833 N309_06833 N309_08829 N309_08829 N309_02115 N309_02115 N309_01939 N309_01939 N309_10243 N309_10243 N309_02041 N309_02041
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N309_12735Putative ATP-dependent RNA helicase DDX11-like 8. (889 aa)
N309_11973Cyclin-H; Belongs to the cyclin family. (300 aa)
N309_14911Cullin-4A; Belongs to the cullin family. (504 aa)
N309_10907Centrin-2. (171 aa)
N309_02586DNA damage-binding protein 1. (1118 aa)
N309_00129Chromatin accessibility complex protein 1. (89 aa)
N309_12932DNA repair protein complementing XP-A cells. (57 aa)
N309_07842Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
N309_04332General transcription factor IIH subunit 5. (68 aa)
N309_07986Replication factor C subunit 4. (318 aa)
N309_14244DNA excision repair protein ERCC-8. (374 aa)
N309_07648DNA repair protein complementing XP-C cells. (829 aa)
N309_03449Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
N309_04704General transcription factor IIH subunit 3. (275 aa)
N309_10974Claspin. (1257 aa)
N309_05679RING-box protein 1. (78 aa)
N309_07138Replication protein A 32 kDa subunit. (203 aa)
N309_07603General transcription factor IIH subunit 1. (548 aa)
N309_09218Cyclin-dependent kinase 7. (316 aa)
N309_00642DNA polymerase delta subunit 2. (250 aa)
N309_08454Centrin-1. (170 aa)
N309_11040DNA polymerase epsilon subunit 3. (121 aa)
N309_09271Replication factor C subunit 2. (316 aa)
N309_09143ATPase family AAA domain-containing protein 5. (1773 aa)
N309_07546DNA excision repair protein ERCC-6. (1507 aa)
N309_14691DNA polymerase epsilon subunit 2. (294 aa)
N309_06266Replication factor C subunit 3. (356 aa)
N309_06665TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
N309_05550Meiosis-specific with OB domain-containing protein. (476 aa)
N309_13924DNA repair protein complementing XP-G cells. (1127 aa)
N309_02197Replication factor C subunit 5. (301 aa)
N309_08924F-box only protein 18. (937 aa)
N309_02375Spindle assembly abnormal protein 6. (640 aa)
N309_15697UV excision repair protein RAD23 B. (356 aa)
N309_12588Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (531 aa)
N309_03790CDK-activating kinase assembly factor MAT1. (279 aa)
N309_10967Replication protein A 14 kDa subunit. (101 aa)
N309_15687PRKR-interacting protein 1. (171 aa)
N309_06833CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (362 aa)
N309_08829Coiled-coil domain-containing protein 94. (181 aa)
N309_02115Chromatin accessibility complex protein 1. (83 aa)
N309_01939Cullin-4B; Belongs to the cullin family. (875 aa)
N309_10243TFIIH basal transcription factor complex helicase XPD subunit. (611 aa)
N309_02041WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (434 aa)
Your Current Organism:
Tinamus guttatus
NCBI taxonomy Id: 94827
Other names: T. guttatus, white-throated tinamou
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