(5 nodes) Granule cell layer network (Callithrix jacchus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCJAP00000072969	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (296 aa)
	DCX	Doublecortin. (366 aa)
	CALB1	Calbindin 1. (261 aa)
	RBFOX3	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (358 aa)
	CA4	Carbonic anhydrase 4; Belongs to the alpha-carbonic anhydrase family. (312 aa)

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CALB1	DCX	ENSCJAP00000000325	ENSCJAP00000013211	Calbindin 1.	Doublecortin.	0.704
CALB1	RBFOX3	ENSCJAP00000000325	ENSCJAP00000017588	Calbindin 1.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.497
DCX	CALB1	ENSCJAP00000013211	ENSCJAP00000000325	Doublecortin.	Calbindin 1.	0.704
DCX	RBFOX3	ENSCJAP00000013211	ENSCJAP00000017588	Doublecortin.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.553
RBFOX3	CALB1	ENSCJAP00000017588	ENSCJAP00000000325	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	Calbindin 1.	0.497
RBFOX3	DCX	ENSCJAP00000017588	ENSCJAP00000013211	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	Doublecortin.	0.553